Re: [OMPI users] problems with openmpi-dev-428-g983bd49

2014-12-05 Thread Siegmar Gross
Hi Jeff, > One thing I meant to ask: has this been happening for a long time? I'm sorry, I don't know. In the past I used Sun Fortran 95 8.6. > Or did you just start building the Fortran bindings? No, I use the bindings from the beginning, but our admin installed the new Oracle Solaris

[OMPI users] Converting --cpus-per-proc to --map-by for a hybrid code

2014-12-05 Thread John Bray
To run a hybrid MPI/OpenMP code on a hyperthreaded machine with 24 virtual cores, I've been using -n 12 --cpus-per-proc 2 so I can use OMP_NUM_THREADS=2 I now see that --cpus-per-proc is deprecated in favour of --map-by, but I've been struggling to find a conversion as the --map-by documentation

Re: [OMPI users] Converting --cpus-per-proc to --map-by for a hybrid code

2014-12-05 Thread Ralph Castain
I’m trying to grok the problem, so bear with me a bit. It sounds like you have a machine with 12 physical cores, each with two hyperthreads, and you have HT turned on - correct? If that is true, then the problem is that you are attempting to bind-to core (of which you have 12), but asking for

Re: [OMPI users] Converting --cpus-per-proc to --map-by for a hybrid code

2014-12-05 Thread John Bray
Hi Ralph I have a motherboard with 2 X6580 chips, each with 6 cores 2 way hyperthreading, so /proc/cpuinfo reports 24 cores Doing a pure compute OpenMP loop where I'd expect the number of iterations in 10s to rise with number of threads with gnu and mpich OMP_NUM_THREADS=1 -n 1 : 112 iterations

Re: [OMPI users] Converting --cpus-per-proc to --map-by for a hybrid code

2014-12-05 Thread Ralph Castain
We may be getting hung up on terminology, but my guess is that the problem is one of accurately understanding how many cores you have vs ht’s.Can you run lstopo and see what it thinks is there? If you haven’t installed that, you can just run “mpirun -mca ess_base_verbose 10 -n 1 hostname” to

[OMPI users] netloc

2014-12-05 Thread Faraj, Daniel A
I have installed the up to date hwloc, jasson, netloc versions on IB cluster. I generated the lstopo xml files for a number of nodes. When I executed: netloc_ib_gather_raw --out-dir ib-raw --hwloc-dir hwloc --sudo Found 0 subnets in hwloc directory: I searched the forum and someone had similar

Re: [OMPI users] netloc

2014-12-05 Thread Brice Goglin
This is a netloc question, not a Open MPI question, so please ask on netloc-us...@open-mpi.org instead. You should attach some of your lstopo outputs to ease debugging. Make sure your lstopo reports I/O devices, it's required for netloc. thanks Brice Le 05/12/2014 21:55, Faraj, Daniel A a