Hi Husen,
Sorry for this late reply.
I gave a quick try at FTB and I managed to get it to work on my local
machine.
I just had to apply this patch to prevent the agent to crash. Maybe this
was your issue:
https://github.com/besserox/ftb/commit/01aa44f5ed34e35429ddf99084395e4e8ba67b7c
Here is a (v
Dear Xavier,
Yes, I did. I followed the instructions available in that file, especially
at sub-section 4.1.
I configured boot-strap IP using the ./configure options.
in front-end node, the boot-strap IP is its IP address because I want to
make it as an ftb_database_server.
in every compute nodes,
Dear Husen,
Did you check the information in file
./docs/chapters/01_FTB_on_Linux.txt inside the ftb tarball?
You might want to look at sub-section 4.1.
You can also try to get support on this via the MVAPICH2 mailing list.
Best regards,
Xavier
On Fri, Mar 18, 2016 at 11:24 AM, Husen R wrot
I don’t believe OMPI supports FTB, I’m afraid - you might want to post your
question on an FTB mailing list (I don’t recall if that project is even active
any more?)
> On Mar 18, 2016, at 3:24 AM, Husen R wrote:
>
> Dear all,
>
> Thanks for the reply and valuable informations.
>
> I have c
Dear all,
Thanks for the reply and valuable informations.
I have configured MVAPICH2 using the instructions available in a resource
provided by Xavier.
I also have installed FTB (Fault-Tolerant Backplane) in order for MVAPICH2
to have process migration feature.
however, I got the following error
On Thu, Mar 17, 2016 at 3:17 PM, Ralph Castain wrote:
> Just to clarify: I am not aware of any MPI that will allow you to relocate a
> process while it is running. You have to checkpoint the job, terminate it,
> and then restart the entire thing with the desired process on the new node.
>
Dear a
Presumably Adaptive MPI would allow you to do that. I don’t know all the
details of how that works there though.
From: users on behalf of Ralph Castain
Reply-To: Open MPI Users
Date: Thursday, March 17, 2016 at 9:17 AM
To: Open MPI Users
Subject: Re: [OMPI users] Fault tolerant feature in
Just to clarify: I am not aware of any MPI that will allow you to relocate a
process while it is running. You have to checkpoint the job, terminate it, and
then restart the entire thing with the desired process on the new node.
> On Mar 16, 2016, at 3:15 AM, Husen R wrote:
>
> In the case of
Husen R writes:
> Dear Open MPI Users,
>
>
> Does the current stable release of Open MPI (v1.10 series) support fault
> tolerant feature ?
> I got the information from Open MPI FAQ that The checkpoint/restart support
> was last released as part of the v1.6 series.
> I just want to make sure about
In the case of MPI application (not gromacs), How do I relocate MPI
application from one node to another node while it is running ?
I'm sorry, as far as I know the *ompi-restart *command is used to restart
application, based on checkpoint file, once the application already
terminated (no longer run
Just checkpoint-restart the app to relocate. The overhead will be lower
than trying to do with MPI.
Jeff
On Wednesday, March 16, 2016, Husen R wrote:
> Hi Jeff,
>
> Thanks for the reply.
>
> After consulting the Gromacs docs, as you suggested, Gromacs already
> supports checkpoint/restart. than
Hi Jeff,
Thanks for the reply.
After consulting the Gromacs docs, as you suggested, Gromacs already
supports checkpoint/restart. thanks for the suggestion.
Previously, I asked about checkpoint/restart in Open MPI because I want to
checkpoint MPI Application and restart/migrate it while it is run
Why do you need OpenMPI to do this? Molecular dynamics trajectories are
trivial to checkpoint and restart at the application level. I'm sure
Gromacs already supports this. Please consult the Gromacs docs or user
support for details.
Jeff
On Tuesday, March 15, 2016, Husen R wrote:
> Dear Open MP
Dear Open MPI Users,
Does the current stable release of Open MPI (v1.10 series) support fault
tolerant feature ?
I got the information from Open MPI FAQ that The checkpoint/restart support
was last released as part of the v1.6 series.
I just want to make sure about this.
and by the way, does Ope
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