Re: [QE-users] "wrong offset" error when using SG15 pseudo

2020-10-30 Thread Timrov Iurii
> Could it mean that SG15 pseudopotentials are not suitable for the DFT+U > calculations? Some pseudopotentials do not contain the information about atomic wavefunctions (and hence you get this error). If I am not wrong, this is the case for SG15 (for some old version). Greetings, Iurii

Re: [QE-users] how to select the perturbed atoms in phonon single q calculation ?

2020-10-30 Thread Omer Mutasim
below are the results for molecule + 9 surface atoms: freq (  1 -  1) =  -2653.0  [cm-1]   --> A   I+R freq (  2 -  2) =  -2647.8  [cm-1]   --> A   I+R freq (  3 -  3) =  -2324.1  [cm-1]   --> A   I+R freq (  4 -  4) = 

Re: [QE-users] how to select the perturbed atoms in phonon single q calculation ?

2020-10-30 Thread Tamas Karpati
Dear Omer, 1, Freqs. can be ordered. Atoms can be ordered. It is intriguing how you want to compare them. But seriously, you have N atoms and 3N normal modes or phonons (some are not real modes, though). How do you want to order them "the same way"? 2, What is more important, you have

Re: [QE-users] "wrong offset" error when using SG15 pseudo

2020-10-30 Thread Matteo Cococcioni
Dear Sergey, try to give a look inside your SG15 pseudopotential for Mn. For some reason the code does not find the d states it is expecting to use for the +U correction. If you do a calculation with dft_plus_u = .false. can you compute the projected density of states? Do you get anything on the

Re: [QE-users] k-point parallelization with localization_thr>0

2020-10-30 Thread Lorenzo Paulatto
Dear Zeeshan, Which error do you get? Kind regards -- Lorenzo Paulatto On Thu, 29 Oct 2020, 21:11 Zeeshan Ahmad, wrote: > Hi, > > I got a segmentation fault when I tried to parallelize over k-points using > localization_thr > 0 when they are specified in crystal. Works fine with > automatic.

Re: [QE-users] Thermodynamics with DFT+U

2020-10-30 Thread Malte Sachs
Dear Iurii, dear Giuseppe, thank you for the interesting discussion. My "knowledge" comes from papers using empirical U values. I see that my question is  still related to an ongoing debate. However, your arguments and references helped my for my discussion. Thanks a lot, best regards,

Re: [QE-users] Thermodynamics with DFT+U

2020-10-30 Thread Ilya Ryabinkin
Dear Yuriii: Treating U as a response property may not be sufficient. Response properties are not bound neither from above nor from below, and a particular (valid!) value of U may still correspond to unphysical values of energy due to the approximate nature of DFT+U. The situation is somewhat

Re: [QE-users] Thermodynamics with DFT+U

2020-10-30 Thread Timrov Iurii
Dear Ilya, Thanks for your comment! > But in general, the study of this interesting question seems to be a real > scientific challenge. Yes, indeed Greetings, Iurii -- Dr. Iurii TIMROV Postdoctoral Researcher STI - IMX - THEOS and NCCR - MARVEL Swiss Federal Institute of Technology

Re: [QE-users] "wrong offset" error when using SG15 pseudo

2020-10-30 Thread Lorenzo Paulatto
Be careful if you plan to use the Mn SG15 pseudopotential with wavefunctions included that you can find on the internet, that it is not identical to the official one and actually has a ghost state. -- Lorenzo Paulatto On Fri, 30 Oct 2020, 10:08 Timrov Iurii, wrote: > > Could it mean that SG15

Re: [QE-users] "wrong offset" error when using SG15 pseudo

2020-10-30 Thread Sergey Lisenkov
Thanks, Lorenzo. What I did: I took input parameters for Mn from pseudo-dojo library (which are the same as in SG15 Mn file), and used new version of ONCVSPS (4.0.1) to generate different XC flavors. 30.10.2020, 17:12, "Lorenzo Paulatto" :Be careful if you plan to use the Mn SG15 pseudopotential

Re: [QE-users] how to select the perturbed atoms in phonon single q calculation ?

2020-10-30 Thread Omer Mutasim
Dear Dr. Tamas,Thanks for the clarification.I think the problem might be the K ponits ( 1 1 1 ) i am using in my scf input file , i will increase it to ( 3 3 1 ) , then i will let you know the results.I’m really learning a lot form you, Thanks a lot Sent from Yahoo Mail for iPhone On

Re: [QE-users] DFT+U calculation and Hubbard_J0 parameter

2020-10-30 Thread Timrov Iurii
Dear Yuvam, > I wanted to know how do I know in what orbital how much U parameter I should > provide. You can compute U from first principles using the hp.x code which is a part of Quantum ESPRESSO. > In QE, there's only one option of Hubbard_U and not any orbital specific > data. But in

Re: [QE-users] "wrong offset" error when using SG15 pseudo

2020-10-30 Thread Timrov Iurii
Dear Sergey, > Is this record "has_wfc = F" relevant? Yes. This means that the pseudo does not contain atomic wavefunctions. I think it is possible to regenerate those pseudos by including the atomic wavefunctions. But you can also look here:

Re: [QE-users] "wrong offset" error when using SG15 pseudo

2020-10-30 Thread Timrov Iurii
Dear Sergey, > I'm aware about SSSP library. There 2 reasons that I want to use > norm-conserving pseudopotentials: > 1) I'm studying a system under pressure, and I want to make sure that PAW > results are consistent with NC (norm-conserving pseudopotentials) results. Ok > 2) Last time I

Re: [QE-users] "wrong offset" error when using SG15 pseudo

2020-10-30 Thread Sergey Lisenkov
Hi Matteo and Iurii, Thanks. I'm not quite sure where to look at pseudopotential. I checked header:             generated="Generated using ONCVPSP code by D. R. Hamann"       author="Martin Schlipf and Francois Gygi"       date="150105"       comment=""       element="Mn"       pseudo_type="NC"   

Re: [QE-users] "wrong offset" error when using SG15 pseudo

2020-10-30 Thread Paolo Giannozzi
Wondering why one doesn't get a more clear, or less obscure, error message ... Paolo On Fri, Oct 30, 2020 at 2:11 PM Timrov Iurii wrote: > Dear Sergey, > > > > I'm aware about SSSP library. There 2 reasons that I want to use > norm-conserving pseudopotentials: > > 1) I'm studying a system under

Re: [QE-users] "wrong offset" error when using SG15 pseudo

2020-10-30 Thread Sergey Lisenkov
Thanks, Iurii I'm aware about SSSP library. There 2 reasons that I want to use norm-conserving pseudopotentials: 1) I'm studying a system under pressure, and I want to make sure that PAW results are consistent with NC (norm-conserving pseudopotentials) results. 2) Last time I checked, there is no

Re: [QE-users] DFT+U calculation and Hubbard_J0 parameter

2020-10-30 Thread Tamas Karpati
Dear all, I feel my question is connected to Yuvam's but also I know that it is slightly off-topic -if so then I'm sorry for that. Given a reaction including a metal atom M, I could derive U for it in the reactant R and another U in the product P. I'm concerned about the changing chemical

Re: [QE-users] "wrong offset" error when using SG15 pseudo

2020-10-30 Thread Lorenzo Paulatto
What I did: I took input parameters for Mn from pseudo-dojo library (which are the same as in SG15 Mn file), and used new version of ONCVSPS (4.0.1) to generate different XC flavors. 30.10.2020, 17:12, "Lorenzo Paulatto" : This should work (and versione 4.x of ONCV should have some ghost

Re: [QE-users] k-point parallelization with localization_thr>0

2020-10-30 Thread Zeeshan Ahmad
Hi Lorenzo, The traceback points to error in the following lines of code. I’m using the 6.6 version: Pairs(full): 64 Pairs(included): 32 Pairs(%): 50.00 #0 0x7f7e1e1775cf in ??? #0 0x7ef9143ec5cf in ??? #0 0x7f1004e455cf in ??? #0 0x7f53ff1115cf in

[QE-users] some query about desnity of states

2020-10-30 Thread Poonam Kaushik
Dear Expert, I am performing spin polarised calculations for one system having 24 atoms with 3 types. Two of them are spin polarised and one is not. During the projected dos calculations I got different dos for each atom, what I am expecting for the same type of atoms i should get the same dos