Resources to create UI using Workflow on Workbench

and only using the given */runs/{id}/lis­teners/io/prop­erties/stdout *output? What if I want the entire workflow diagram to be shown in a web interface? Is there any support for that? Thanks! -- Vimig Socrates Case Western Reserve University Class of 2018

How to Use Beanshells and Lists

Processor 'Beanshell' - Port 'outputVal': Error accessing beanshell input/output data for net.sf.taverna.t2.activities. beanshell.BeanshellActivity$1@680a8ae1 I am unsure on why this is, and there is no stack trace for me to debug with. Any help would be much appreciated. Thank you. -- Vimig Socrates

Taverna 2.54 Server POST Request HTTP Error 415

' \ -H 'Postman-Token: 80a0ed49-e86e-5d2b-14cc-1530c5f9e5fd' \ -H 'content-type: multipart/form-data; boundary=WebKitFormBoundary7MA4YWxkTrZu0gW' \ -F =@/.../conversion_workflow.t2flow Please let me know! Thanks! -- Vimig Socrates

Re: Taverna 2.54 Server POST Request HTTP Error 415

I think being able to post the objects as a t2flow object or JSON are more than enough. I don't see much benefit in making them form-data. -- Vimig Socrates Case Western Reserve University Class of 2018 On Tue, Apr 10, 2018 at 4:21 AM, Stian Soiland-Reyes <st...@apache.org> wrote: >

Re: Taverna 2.54 Server POST Request HTTP Error 415

Thank you. That basically worked. I had to post as a binary object as opposed to form-data. -- Vimig Socrates Case Western Reserve University Class of 2018 On Mon, Apr 9, 2018 at 10:33 AM, Stian Soiland-Reyes <st...@apache.org> wrote: > Hi, > > POSTing with Content-T

Get UUID during Workflow Run

Hello, Is there a way to get the Taverna workflow UUID in Taverna 2.5 within the workflow? I want to create a file named with a unique identifier per run. Thank you! -- Vimig Socrates Case Western Reserve

Re: Resources to create UI using Workflow on Workbench

of the workflow. Thank you all for your help so far! -- Vimig Socrates Case Western Reserve University Class of 2018 On Thu, Sep 20, 2018 at 3:49 PM Donal K. Fellows < donal.k.fell...@manchester.ac.uk> wrote: > On 20/09/2018 16:45, Ian Dunlop wrote: > > I’m not sure how to get deep i

Re: Resources to create UI using Workflow on Workbench

Hi, Just following up on this email. As a recap, I would like to embed the image of the workflow (that I see on the Workbench) from the Taverna Server 2.5 into my Django app. What is my best bet in doing this? Thanks! -- Vimig Socrates Case Western Reserve University Class of 2018 On Sat, Sep

Re: Resources to create UI using Workflow on Workbench

. I believe this is functionality I will need and it seems feasible since the workbench provides this capability. Could you point me in the right direction, if I wanted to make changes to the server code to get finer grain updates? Thank you! -- Vimig Socrates Case Western Reserve University Class of

Re: Resources to create UI using Workflow on Workbench

should I hit to get an update of where along the workflow the system currently is? Please let me know. Thanks! -- Vimig Socrates Case Western Reserve University Class of 2018 On Tue, Sep 4, 2018 at 1:16 PM, Ian Dunlop wrote: > Hello, > > > > Have a look at https://gi

Dockerization of Taverna Server - Vimig Socrates

I've attached the full *tavserv.out* file for reference. I believe the reason is that 127.0.0.1 refers to the host computer through the Docker bridge, but I am not sure how to fix that. Do I need to add something to the tavernaserver.properties file? Thanks for the help! -- Vimig Socrates Case Western

Re: Dockerization of Taverna Server - Vimig Socrates

uns>* endpoint using a REST service in my workflow and since Docker sees localhost as the host machine, that doesn't work. Has anyone else run into this issue? If so, any help would be appreciated! Thank you! -- Vimig Socrates Case Western Reserve University Class of 2018 On Wed, Apr 3, 2019 a

Re: Dockerization of Taverna Server - Vimig Socrates

-developers there. Thanks for the help! -- Vimig Socrates Case Western Reserve University Class of 2018 On Thu, Apr 4, 2019 at 8:13 AM Ian Dunlop wrote: > Hello, > > > > I wonder if using --network="host" in your docker run command would help. > That should make the d

Re: Dockerization of Taverna Server - Vimig Socrates

I'm unsure which port those subprocesses are run on. I have tried curling for port 80 and I receive a Connection Refused. I saw in the admin console that the RMI server runs on port 1099, but that doesn't seem to work either. Is that the correct approach? Thanks for the help! -- Vimig Socrates

Re: Dockerization of Taverna Server - Vimig Socrates

Hi, Thank you all for your help. It turns out I just needed to increase the memory limit on the Docker container. I am not sure how that manifested itself in a 127.0.0.1 Connection Refused error. Thank you for your help however. -- Vimig Socrates Case Western Reserve University Class of 2018

Re: Taverna Server 2.5.4 Provenance File Location

Hi, I thought that 2.5.5 was the most recent release of the Taverna (pre-Apache). I don't see it on the Github repo either. Please let me know where the war file is. Thanks! -- Vimig Socrates Case Western Reserve University Class of 2019 On Sun, Feb 24, 2019 at 4:11 PM Vimig Socrates wrote

Taverna 3.1.0 vs Taverna 2.5.4

to the release notes. Thanks! -- Vimig Socrates Case Western Reserve University Class of 2018

Taverna Server 2.5.4 Provenance File Location

can rerun the workflow easily. Thanks! -- Vimig Socrates Case Western Reserve University Class of 2018