Hi Regine,
did you try inverting with vmtkimageshiftscale?
vmtkimageshiftscale -ifile input.mha -scale -1.0
If you need to re-obtain positive intensity levels for some reason, you need to
pipe another shift scale for the shift part:
vmtkimageshiftscale -ifile input.mha -scale -1.0 --pipe vmtk
Dear all,a friend of mine came up with a dicom data set of the lung. She wants to extract the trachea which is represented with a lower intensity as compared to their environment (since it is filled with air). We tried to use vmtklevelsetsegmentation, but it didn't work due to the inverted intensit
Seems I got over the problem. The PypePad now takes in my input.
Sorry for the disruption, Ido
On Mon, Jul 18, 2011 at 1:41 PM, ido yerushalmy wrote:
> Hi,
> I am starting to use VMTK and have successfully compiled the source
> (revision 306) in debug mode.
> I am working on Windows and using the
Hi,
I am starting to use VMTK and have successfully compiled the source
(revision 306) in debug mode.
I am working on Windows and using the PypePad to run Python scripts.
I'm following the tutorial on level-set segmentation (
http://www.vmtk.org/Tutorials/ImageBasedModeling) and the few first step
