Re: [votca] Error compiling on CentOS 6.7

[Christoph Junghans]

On Tue, Nov 28, 2017 at 9:22 AM, Dave Giesen  wrote:
> I'm attaching the full compilation log. I've had to convert it to PDF as
> Google Groups kept blocking me from posting it as a text file.
Can you add "--verbose" and post the output again? Also there is
something fishy going with the compiler, the C compiler is gcc-4.4.7
while the C++ compiler is gcc-4.9.3.

And please post your replies to votca-...@googlegroups.com as this is
not an issue with votca-csg!

Christoph


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Re: [votca] Error compiling on CentOS 6.7

[Dave Giesen]

I'm attaching the full compilation log. I've had to convert it to PDF as 
Google Groups kept blocking me from posting it as a text file.

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ctp.pdf
Description: Adobe PDF document

Re: [votca] Error compiling on CentOS 6.7

[Dave Giesen]

I'm not sure how to answer that question exactly.  The contents of the 
BOOST_ROOT directory are:

include
lib

The include directory has a bunch of .so files (and .a and .so.1.620 files)
The lib directory has a bunch of subdirectories and and .hpp files.

I installed gsl via "yum install".


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Re: [votca] Error compiling on CentOS 6.7

[Christoph Junghans]

On Tue, Nov 28, 2017 at 8:44 AM, Dave Giesen  wrote:
>
> Hi -
>
> I'm trying to compile votca on a Centos 6.7 system and am running into an
> error. I've attached the compilation log.  I used the following steps:
>
> mkdir votca votca/src
> cd votca/src
> wget https://raw.githubusercontent.com/votca/buildutil/master/build.sh
> chmod u+x build.sh
> export PATH=~/cmake/bin:$PATH
> export BOOST_ROOT=/software/lib/Linux-x86_64/boost_1_62_0
> ./build.sh -DWITH_GMX=OFF --prefix ~/git/votca --dev tools csg kmc moo ctp
> ctp-tutorials ctp-manual >& ctp.log
>
> The errors I am getting are with the ctp compilation:
>
> ../libctp/libvotca_ctp.so: error: undefined reference to
> 'boost::system::generic_category()'
> ../libctp/libvotca_ctp.so: error: undefined reference to
> 'boost::system::system_category()'
> ../libctp/libvotca_ctp.so: error: undefined reference to
> 'gsl_matrix_const_view_array'
> ../libctp/libvotca_ctp.so: error: undefined reference to
> 'gsl_matrix_view_array'
> ../libctp/libvotca_ctp.so: error: undefined reference to 'gsl_blas_dgemm'
>
> Thanks in advance for any help -
[CC'ing votca-ctp as this is a ctp problem.]

Are you using a shared (.so file) version of boost and gsl?

Christoph
>
> Dave
>
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Christoph Junghans
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[votca] Error compiling on CentOS 6.7

[Dave Giesen]

Hi -

I'm trying to compile votca on a Centos 6.7 system and am running into an 
error. I've attached the compilation log.  I used the following steps:

mkdir votca votca/src
cd votca/src
wget https://raw.githubusercontent.com/votca/buildutil/master/build.sh
chmod u+x build.sh
export PATH=~/cmake/bin:$PATH
export BOOST_ROOT=/software/lib/Linux-x86_64/boost_1_62_0
./build.sh -DWITH_GMX=OFF --prefix ~/git/votca --dev tools csg kmc moo ctp 
ctp-tutorials ctp-manual >& ctp.log

The errors I am getting are with the ctp compilation:

../libctp/libvotca_ctp.so: error: undefined reference to 
'boost::system::generic_category()'
../libctp/libvotca_ctp.so: error: undefined reference to 
'boost::system::system_category()'
../libctp/libvotca_ctp.so: error: undefined reference to 
'gsl_matrix_const_view_array'
../libctp/libvotca_ctp.so: error: undefined reference to 
'gsl_matrix_view_array'
../libctp/libvotca_ctp.so: error: undefined reference to 'gsl_blas_dgemm'

Thanks in advance for any help -

Dave

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