Re: [Wien] gather_energy.pl related issue

[Dr. K. C. Bhamu]

Yes, It is empty after running gather_energy.pl.
How to combine two *.energy_1(_2) files?

Kind regards


Bhamu

On Sat, May 21, 2016 at 11:04 AM, Gavin Abo  wrote:

> The script gather_energy.pl is coded to combine parallel files with
> numbers from 1-9 and from 10-99.
>
> The "cat: mbj3.energy_??: No such file or directory" error is because it
> cannot find a parallel file with a two digit number like mbj3.energy_10.
>
> You only have parallel files with numbers from 1-2 (i.e., mbj3.energy_1
> and mbj3.energy_2).  So you can just ignore the error.
>
> If mbj3.energy is empty before that is fine.  However, it is not fine if
> mbj3.energy is empty after running gather_energy.pl.  It should combine a
> non-empty mbj3.energy_1 and mbj3.energy_2 into a non-empty mbj3.energy.
>
> On 5/20/2016 10:31 PM, Dr. K. C. Bhamu wrote:
>
> Dear Users/Gavin
>
> I copied gather_energy.pl into PWD and did chmod +x gather_energy.pl.Then
> I followed
>
> [bhamu@physics mbj3]$ gather_energy.pl mbj3
> cat: mbj3.energy_??: No such file or directory
> [bhamu@physics mbj3]$
>
> I have the following energy files:
> mbj3.energy  mbj3.energy_1mbj3.energy_2mbj3.energydn
> mbj3.energydn_1  mbj3.energydn_2. Where mbj3.energy and mbj3.energydn are
> empty files.
> I am running for non spin polarise and non magnetic case.
>
> Its two CPU based cluster and job was ran on head node.
> What may be source of error?
>
>
> Kind regards
>
> Bhamu
>
>
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Re: [Wien] gather_energy.pl related issue

[Gavin Abo]

The script gather_energy.pl is coded to combine parallel files with 
numbers from 1-9 and from 10-99.


The "cat: mbj3.energy_??: No such file or directory" error is because it 
cannot find a parallel file with a two digit number like mbj3.energy_10.


You only have parallel files with numbers from 1-2 (i.e., mbj3.energy_1  
and mbj3.energy_2).  So you can just ignore the error.


If mbj3.energy is empty before that is fine.  However, it is not fine if 
mbj3.energy is empty after running gather_energy.pl.  It should combine 
a non-empty mbj3.energy_1 and mbj3.energy_2 into a non-empty mbj3.energy.


On 5/20/2016 10:31 PM, Dr. K. C. Bhamu wrote:

Dear Users/Gavin

I copied gather_energy.pl  into PWD and did 
chmod +x gather_energy.pl.Then I followed


[bhamu@physics mbj3]$ gather_energy.pl  mbj3
cat: mbj3.energy_??: No such file or directory
[bhamu@physics mbj3]$

I have the following energy files:
mbj3.energy  mbj3.energy_1mbj3.energy_2 mbj3.energydn
mbj3.energydn_1  mbj3.energydn_2. Where mbj3.energy and mbj3.energydn 
are empty files.

I am running for non spin polarise and non magnetic case.

Its two CPU based cluster and job was ran on head node.
What may be source of error?


Kind regards

Bhamu
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[Wien] gather_energy.pl related issue

[Dr. K. C. Bhamu]

Dear Users/Gavin

I copied gather_energy.pl into PWD and did chmod +x gather_energy.pl.Then I
followed

[bhamu@physics mbj3]$ gather_energy.pl mbj3
cat: mbj3.energy_??: No such file or directory
[bhamu@physics mbj3]$

I have the following energy files:
mbj3.energy  mbj3.energy_1mbj3.energy_2mbj3.energydn
mbj3.energydn_1  mbj3.energydn_2. Where mbj3.energy and mbj3.energydn are
empty files.
I am running for non spin polarise and non magnetic case.

Its two CPU based cluster and job was ran on head node.
What may be source of error?


Kind regards

Bhamu
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