Complete sequoia deadlock when trying to perfom a backup via the sequoia 
console.  ... still waiting for 0 pending transactions to complete ...
-----------------------------------------------------------------------------------------------------------------------------------------------

         Key: SEQUOIA-864
         URL: https://forge.continuent.org/jira/browse/SEQUOIA-864
     Project: Sequoia
        Type: Bug
  Components: Backup System  
    Versions: Sequoia 2.10.2    
 Environment: CentOS 4.4 Kernel 2.6.9-42.0.3.ELsmp x86_64 x86_64 x86_64 
GNU/Linux, 
MySQL-server-standard-5.0.24a-0.rhel4 (rpm from MySQL),

    Reporter: Stefan Schank


We have a serious problem when trying to perform a backup via the sequoia 
console Application. Our configuration is a RAIDb-1 with two separate single 
MySQL instances. 
We have had the situation, that a malformed statement was issued from an SQL 
Query Tool which caused the following exception:

java.sql.SQLException: write request xxxxx failed: Backend xxxxx - 
BackendWorkerThread for backend 'node1' with RAIDb level:1 failed (Unknown 
column 'name' in 'field list')

Some hours later we tried to make a backup with the MyQSLBackuper and the 
full_cluster Logfile was filled with the following entries:

2006-12-01 20:12:54,387 WARN  sequoia.controller.scheduler Timeout in begin, 
still waiting for 0 pending transactions to complete
2006-12-01 20:12:54,387 WARN  controller.virtualdatabase.xxxxx Begin failed 
(Timeout in begin, still waiting for 0 pending transactions to complete)
2006-12-01 20:12:54,387 WARN  virtualdatabase.VirtualDatabaseWorkerThread.xxxxx 
Error during command execution (Timeout in begin, still waiting for 0 pending 
transaction
s to complete)

The console app began to hang and the databases couldn't be contacted any 
further through sequoia. We didn't manage it to disable the backend nor to stop 
the backup command. It also was not possible to kill the pending transaction, 
so that the backup could proceed. After all we had to kill the sequoia 
processes and had to recover the complete configuration including the databases 
on both nodes.

We need a reliable solution even in the case, that malformed transactions or 
statements are issued to sequoia. Any suggestions?

Configuraion files et. al. can be provided if necessary.

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