Hi siesta users, I saw your email in the mail list. I encounter the same problem as you described in the email. It seems that my jobs can be run smoothly on a core (not a note), but the jobs will be aborted after the first CG/MD step when I used multi-cores to run the jobs. So did you solve the problem or any idea with my problem? Thanks so much.
Have a good day Ting Zheng 2014-12-03 0:27 GMT-06:00 joyce79928cc . <[email protected]>: > yes > > -- > Best Regards > > 邱芳瑜 Chiu Fang Yu > 國立成功大學 材料科學與工程學系碩二 > MOBILE：0930287221(中華) > GMAIL：[email protected] <[email protected]> > > > > 2014-12-03 14:18 GMT+08:00 邵德喜 <[email protected]>: > >> Is that completed successfully? >> >> 2014-12-03 11:06 GMT+08:00 joyce79928cc . <[email protected]>: >> >> I changed my job to 1core calculation job >>> >>> >>> -- >>> Best Regards >>> >>> 邱芳瑜 Chiu Fang Yu >>> 國立成功大學 材料科學與工程學系碩二 >>> MOBILE：0930287221(中華) >>> GMAIL：[email protected] <[email protected]> >>> >>> >>> >>> 2014-12-03 10:31 GMT+08:00 邵德喜 <[email protected]>: >>> >>>> Have you ever solved the problem yet? >>>> I've found that this problem occurs in the part of transiesta >>>> calculation, then all of the jobs shut down at the same point from the >>>> OUTPUT just as follows: >>>> >>>> TRANSIESTA: Initializing lists >>>> From SIESTA: Efermi= -4.358 >>>> qc0 : 0.000 >>>> qcn0 : 250.519 >>>> nou,NGL,NGR: 1664 208 208 >>>> rank 20 in job 1 i02n10_59047 caused collective abort of all ranks >>>> exit status of rank 20: killed by signal 9 >>>> Job >>>> /fs00/software/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/intelmpi_wrapper >>>> /fs08/home/js_dxshao/bin/transiesta >>>> >>>> TID HOST_NAME COMMAND_LINE STATUS >>>> TERMINATION_TIME >>>> ===== ========== ================ ======================= >>>> =================== >>>> 00000 i02n10 /fs08/home/js_dx Exit (status unknown) >>>> >>>> 00001 i02n10 /fs08/home/js_dx Exit (status unknown) >>>> >>>> It's really so kind of all to give any advice ang guidence. >>>> Thanks in advance! >>>> >>>> 2014-11-30 20:13 GMT+08:00 joyce79928cc . <[email protected]>: >>>> >>>> Today I got this error, too >>>>> >>>>> -- >>>>> Best Regards >>>>> >>>>> 邱芳瑜 Chiu Fang Yu >>>>> 國立成功大學 材料科學與工程學系碩二 >>>>> MOBILE：0930287221(中華) >>>>> GMAIL：[email protected] <[email protected]> >>>>> >>>>> >>>>> >>>>> 2014-11-30 16:52 GMT+08:00 邵德喜 <[email protected]>: >>>>> >>>>>> Dear all: >>>>>> I‘m sorry to disturb but today when I take transiesta calculation, >>>>>> error as follows occured: >>>>>> forrtl: severe (174): SIGSEGV, segmentation fault occurred >>>>>> Any suggestion will be appreciated. >>>>>> Dexi Shao >>>>>> >>>>> >>>>> >>>> >>> >> >
