In my case, my jobs even can not be run smoothly on a core. I have not solved it yet. Any ideas and comments will be appreciated.
2014-12-08 5:23 GMT+08:00 Ting Zheng <[email protected]>: > Hi siesta users, > > I saw your email in the mail list. I encounter the same problem as you > described in the email. It seems that my jobs can be run smoothly on a core > (not a note), but the jobs will be aborted after the first CG/MD step when > I used multi-cores to run the jobs. So did you solve the problem or any > idea with my problem? Thanks so much. > > Have a good day > > Ting Zheng > > > > > 2014-12-03 0:27 GMT-06:00 joyce79928cc . <[email protected]>: > > yes >> >> -- >> Best Regards >> >> 邱芳瑜 Chiu Fang Yu >> 國立成功大學 材料科學與工程學系碩二 >> MOBILE：0930287221(中華) >> GMAIL：[email protected] <[email protected]> >> >> >> >> 2014-12-03 14:18 GMT+08:00 邵德喜 <[email protected]>: >> >>> Is that completed successfully? >>> >>> 2014-12-03 11:06 GMT+08:00 joyce79928cc . <[email protected]>: >>> >>> I changed my job to 1core calculation job >>>> >>>> >>>> -- >>>> Best Regards >>>> >>>> 邱芳瑜 Chiu Fang Yu >>>> 國立成功大學 材料科學與工程學系碩二 >>>> MOBILE：0930287221(中華) >>>> GMAIL：[email protected] <[email protected]> >>>> >>>> >>>> >>>> 2014-12-03 10:31 GMT+08:00 邵德喜 <[email protected]>: >>>> >>>>> Have you ever solved the problem yet? >>>>> I've found that this problem occurs in the part of transiesta >>>>> calculation, then all of the jobs shut down at the same point from the >>>>> OUTPUT just as follows: >>>>> >>>>> TRANSIESTA: Initializing lists >>>>> From SIESTA: Efermi= -4.358 >>>>> qc0 : 0.000 >>>>> qcn0 : 250.519 >>>>> nou,NGL,NGR: 1664 208 208 >>>>> rank 20 in job 1 i02n10_59047 caused collective abort of all ranks >>>>> exit status of rank 20: killed by signal 9 >>>>> Job >>>>> /fs00/software/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/intelmpi_wrapper >>>>> /fs08/home/js_dxshao/bin/transiesta >>>>> >>>>> TID HOST_NAME COMMAND_LINE STATUS >>>>> TERMINATION_TIME >>>>> ===== ========== ================ ======================= >>>>> =================== >>>>> 00000 i02n10 /fs08/home/js_dx Exit (status unknown) >>>>> >>>>> 00001 i02n10 /fs08/home/js_dx Exit (status unknown) >>>>> >>>>> It's really so kind of all to give any advice ang guidence. >>>>> Thanks in advance! >>>>> >>>>> 2014-11-30 20:13 GMT+08:00 joyce79928cc . <[email protected]>: >>>>> >>>>> Today I got this error, too >>>>>> >>>>>> -- >>>>>> Best Regards >>>>>> >>>>>> 邱芳瑜 Chiu Fang Yu >>>>>> 國立成功大學 材料科學與工程學系碩二 >>>>>> MOBILE：0930287221(中華) >>>>>> GMAIL：[email protected] <[email protected]> >>>>>> >>>>>> >>>>>> >>>>>> 2014-11-30 16:52 GMT+08:00 邵德喜 <[email protected]>: >>>>>> >>>>>>> Dear all: >>>>>>> I‘m sorry to disturb but today when I take transiesta calculation, >>>>>>> error as follows occured: >>>>>>> forrtl: severe (174): SIGSEGV, segmentation fault occurred >>>>>>> Any suggestion will be appreciated. >>>>>>> Dexi Shao >>>>>>> >>>>>> >>>>>> >>>>> >>>> >>> >> >
