Hello everyone,
Sorry to jump in this thread but I am actually hitting a similar error:
(attachment error.txt for more details)
nf_ncdf.f90(3017): catastrophic error: Too many errors, exiting
compilation aborted for nf_ncdf.f90 (code 1)
make[2]: *** [nf_ncdf.o] Error 1
make[2]: Leaving directory
`/projects/acad/ucl-naps/software/transiesta/4.1_b1_NETCDF/src/Obj/NCDF/src'
make[1]: *** [lib] Error 2
make[1]: Leaving directory
`/projects/acad/ucl-naps/software/transiesta/4.1_b1_NETCDF/src/Obj/NCDF'
make: *** [libncdf.a] Error 2
my arch.make is like this:
.SUFFIXES:
.SUFFIXES: .f .F .o .a .f90 .F90
SIESTA_ARCH=x86_64-unknown-linux-gnu--unknown
FPP=
FPP_OUTPUT=
FC=mpif90
RANLIB=ranlib
SYS=nag
SP_KIND=4
DP_KIND=8
KINDS=$(SP_KIND) $(DP_KIND)
FFLAGS=-O1
FPPFLAGS= -DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT
LDFLAGS=
MKL_LIBS=${MKLROOT}/lib/intel64/libmkl_blas95_lp64.a
${MKLROOT}/lib/intel64/libmkl_lapack95_lp64.a -L${MKLROOT}/lib/intel64
-lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential
-lmkl_blacs_intelmpi_lp64 -lpthread -lm -ldl
#NETCDF_INCFLAGS=-I/softs/netcdf/4.3.2-el6/intel/2013_sp1.1.106/intelmpi/4.1.3.045/include
NETCDF_LIBS=-L/softs/netcdf/4.3.2-el6/intel/2013_sp1.1.106/intelmpi/4.1.3.045/lib
-lnetcdff -lnetcdf
HDF5_LIBS=-L/softs/hdf5/1.8.13-el6/intel/2013_sp1.1.106/intelmpi/4.1.3.045/lib
-lhdf5_fortran -lhdf5
COMP_LIBS=libsiestaLAPACK.a
COMP_LIBS += libncdf.a
FPPFLAGS += -DCDF -DNCDF -DNCDF_4
LIBS=$(MKL_LIBS) $(NETCDF_LIBS) $(HDF5_LIBS)
MPI_INTERFACE=libmpi_f90.a
MPI_INCLUDE=.
.F.o:
$(FC) -c $(FFLAGS) $(INCFLAGS) $(FPPFLAGS) $(FPPFLAGS_fixed_F) $<
.F90.o:
$(FC) -c $(FFLAGS) $(INCFLAGS) $(FPPFLAGS) $(FPPFLAGS_free_F90) $<
.f.o:
$(FC) -c $(FFLAGS) $(INCFLAGS) $(FCFLAGS_fixed_f) $<
.f90.o:
$(FC) -c $(FFLAGS) $(INCFLAGS) $(FCFLAGS_free_f90) $<
Sorry again to jump in this thread. Thank you in advance for your time.
Jean-Jo
Le 23/09/16 à 07:58, Nick Papior a écrit :
Please attach your entire arch.make file. There are a few unknowns in
your compilation process.
2016-09-23 2:52 GMT+02:00 I. Camps <ica...@gmail.com
<mailto:ica...@gmail.com>>:
Hello,
I am trying to compile siesta-4.1-b1 with NetCDF4 but I am getting
into troubles :(
The errors are (my system info is bellow):
####################
mpiifort -E -P -x c -DCDF -DNCDF_4 -DMPI -DNCDF_PARALLEL -I.
-I/home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src
/home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src/nf_ncdf.F90 |
sed -e 's/NEWLINE/\n/g;/^$/d;/^\!.*&/d;
s/[[:space:]]*##[[:space:]]*\([^[:space:]]*\)/\1/g;
s/[[:space:]]*#\([^i][^[:space:]]*\)/"\1"/g; s:/ /://:g;
s/"endif"/\n#endif/g' > nf_ncdf.f90 #2> /dev/null
ifort: command line warning #10155: ignoring option '-x'; argument
required
ifort: error #10236: File not found: 'c'
mpiifort -c -w -O2 -mp -I../../ nf_ncdf.f90
nf_ncdf.f90(59): error #7002: Error in opening the compiled module
file. Check INCLUDE paths. [NETCDF]
use netcdf
------^
nf_ncdf.f90(95): error #8237: The character length in a component
declaration shall either be a colon, be an initialization
expression, or be a specification expression. [GRP]
character(len=NF90_MAX_NAME) :: grp = " "
-------------------------------------^
nf_ncdf.f90(95): error #6404: This name does not have a type, and
must have an explicit type. [NF90_MAX_NAME]
character(len=NF90_MAX_NAME) :: grp = " "
-------------------^
nf_ncdf.f90(255): error #6404: This name does not have a type, and
must have an explicit type. [NF90_MPIIO]
par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
---------------^
nf_ncdf.f90(255): error #6363: The intrinsic data types of the
arguments must be the same. [IAND]
par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
--------------------------^
nf_ncdf.f90(255): error #6404: This name does not have a type, and
must have an explicit type. [IAND]
par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
----------^
nf_ncdf.f90(257): error #6404: This name does not have a type, and
must have an explicit type. [NF90_MPIPOSIX]
par = iand(NF90_MPIPOSIX,this%mode) == NF90_MPIPOSIX
---------------^
nf_ncdf.f90(259): error #6404: This name does not have a type, and
must have an explicit type. [NF90_PNETCDF]
par = iand(NF90_PNETCDF,this%mode) == NF90_PNETCDF
---------------^
nf_ncdf.f90(297): error #6404: This name does not have a type, and
must have an explicit type. [NF90_64BIT_OFFSET]
this%mode = IOR(this%mode,NF90_64BIT_OFFSET)
---------------------------------^
nf_ncdf.f90(297): error #6363: The intrinsic data types of the
arguments must be the same. [IOR]
this%mode = IOR(this%mode,NF90_64BIT_OFFSET)
---------------------------------^
nf_ncdf.f90(311): error #6404: This name does not have a type, and
must have an explicit type. [NF90_SHARE]
if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
-----------------------^
nf_ncdf.f90(311): error #6363: The intrinsic data types of the
arguments must be the same. [IAND]
if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
----------------------------------^
nf_ncdf.f90(311): error #6404: This name does not have a type, and
must have an explicit type. [IAND]
if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
------------------^
nf_ncdf.f90(359): error #6404: This name does not have a type, and
must have an explicit type. [NF90_FORMAT_CLASSIC]
case ( NF90_FORMAT_CLASSIC )
--------------^
nf_ncdf.f90(359): error #6601: In a CASE statement, the case-value
must be a constant expression. [NF90_FORMAT_CLASSIC]
case ( NF90_FORMAT_CLASSIC )
--------------^
nf_ncdf.f90(359): error #6612: In a CASE statement, the case-value
must be of type INTEGER, CHARACTER, or LOGICAL. [NF90_FORMAT_CLASSIC]
case ( NF90_FORMAT_CLASSIC )
--------------^
nf_ncdf.f90(359): error #6611: The case-value must be of the same
type as the case-expr. [NF90_FORMAT_CLASSIC]
case ( NF90_FORMAT_CLASSIC )
--------------^
nf_ncdf.f90(361): error #6404: This name does not have a type, and
must have an explicit type. [NF90_FORMAT_64BIT]
case ( NF90_FORMAT_64BIT )
--------------^
nf_ncdf.f90(361): error #6601: In a CASE statement, the case-value
must be a constant expression. [NF90_FORMAT_64BIT]
case ( NF90_FORMAT_64BIT )
--------------^
nf_ncdf.f90(361): error #6612: In a CASE statement, the case-value
must be of type INTEGER, CHARACTER, or LOGICAL. [NF90_FORMAT_64BIT]
case ( NF90_FORMAT_64BIT )
--------------^
nf_ncdf.f90(361): error #6611: The case-value must be of the same
type as the case-expr. [NF90_FORMAT_64BIT]
case ( NF90_FORMAT_64BIT )
--------------^
nf_ncdf.f90(363): error #6404: This name does not have a type, and
must have an explicit type. [NF90_FORMAT_NETCDF4]
case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
--------------^
nf_ncdf.f90(363): error #6601: In a CASE statement, the case-value
must be a constant expression. [NF90_FORMAT_NETCDF4]
case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
--------------^
nf_ncdf.f90(363): error #6612: In a CASE statement, the case-value
must be of type INTEGER, CHARACTER, or LOGICAL. [NF90_FORMAT_NETCDF4]
case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
--------------^
nf_ncdf.f90(363): error #6611: The case-value must be of the same
type as the case-expr. [NF90_FORMAT_NETCDF4]
case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
--------------^
nf_ncdf.f90(363): error #6404: This name does not have a type, and
must have an explicit type. [NF90_FORMAT_NETCDF4_CLASSIC]
case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
-----------------------------------^
nf_ncdf.f90(363): error #6601: In a CASE statement, the case-value
must be a constant expression. [NF90_FORMAT_NETCDF4_CLASSIC]
case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
-----------------------------------^
nf_ncdf.f90(363): error #6612: In a CASE statement, the case-value
must be of type INTEGER, CHARACTER, or LOGICAL.
[NF90_FORMAT_NETCDF4_CLASSIC]
case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
-----------------------------------^
nf_ncdf.f90(363): error #6611: The case-value must be of the same
type as the case-expr. [NF90_FORMAT_NETCDF4_CLASSIC]
case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
-----------------------------------^
nf_ncdf.f90(3132): catastrophic error: Too many errors, exiting
compilation aborted for nf_ncdf.f90 (code 1)
make[2]: ***
[/home/icamps/Temp/SIESTA/siesta-4.1-b1/tmp-para-netcdf/arch.make:92:
nf_ncdf.o] Error 1
make[2]: Leaving directory
'/home/icamps/Temp/SIESTA/siesta-4.1-b1/tmp-para-netcdf/NCDF/src'
make[1]: *** [Makefile:20: lib] Error 2
make[1]: Leaving directory
'/home/icamps/Temp/SIESTA/siesta-4.1-b1/tmp-para-netcdf/NCDF'
make: *** [Makefile:372: libncdf.a] Error 2
####################
My system:
************************
OpenSUSE Tumbleweed (up-to-date)
Intel Parallel Studio XE 2017 (Fortran compiler, MPI, MKL, etc.)
HDF5 1.8.17 (configured/compiled with FC=mpiifort CC=mpicc
./configure --enable-parallel --prefix=${H5DIR}
--with-zlib=${H5DIR} --enable-fortran --enable-fortran2003)
NetCDF4.4.1 (configured/compiled with CC=mpicc
CPPFLAGS=-I${H5DIR}/include LDFLAGS=-L${H5DIR}/lib64 ./configure
--prefix=${NCDIR} --enable-netcdf-4 --enable-pnetcdf)
In my arch.make:
ETCDF_ROOT=/software/lib/netcdf
NETCDF_INCFLAGS=-I$(NETCDF_ROOT)/include
NETCDF_LIBS=-L$(NETCDF_ROOT)/lib64 -lnetcdff -lnetcdf
-lhdf5_fortran -lhdf5 -lz
FPPFLAGS_CDF=-DCDF -DNCDF_4
COMP_LIBS += libncdf.a libfdict.a
LIBS=$(SUGGESTED_LIBS) $(NETCDF_LIBS) $(COMP_LIBS)
************************
[]'s,
Camps
--
Kind regards Nick
mpif90 -E -P -x c -I/projects/acad/napsimu/local/include -DMPI -DFC_HAVE_FLUSH
-DFC_HAVE_ABORT -DCDF -DNCDF -DNCDF_4 -DTRANSIESTA -I.
-I/projects/acad/ucl-naps/software/transiesta/4.1_b1_NETCDF/src/Src/NCDF/src
/projects/acad/ucl-naps/software/transiesta/4.1_b1_NETCDF/src/Src/NCDF/src/nf_ncdf.F90
| sed -e 's/NEWLINE/\n/g;/^$/d;/^\!.*&/d;
s/[[:space:]]*##[[:space:]]*\([^[:space:]]*\)/\1/g;
s/[[:space:]]*#\([^i][^[:space:]]*\)/"\1"/g; s:/ /://:g; s/"endif"/\n#endif/g'
> nf_ncdf.f90 #2> /dev/null
ifort: command line warning #10155: ignoring option '-x'; argument required
ifort: error #10236: File not found: 'c'
mpif90 -c -O1 -I../../ nf_ncdf.f90
nf_ncdf.f90(59): error #7002: Error in opening the compiled module file. Check
INCLUDE paths. [NETCDF]
use netcdf
------^
nf_ncdf.f90(95): error #8237: The character length in a component declaration
shall either be a colon, be an initialization expression, or be a specification
expression. [GRP]
character(len=NF90_MAX_NAME) :: grp = " "
-------------------------------------^
nf_ncdf.f90(95): error #6404: This name does not have a type, and must have an
explicit type. [NF90_MAX_NAME]
character(len=NF90_MAX_NAME) :: grp = " "
-------------------^
nf_ncdf.f90(255): error #6404: This name does not have a type, and must have an
explicit type. [NF90_MPIIO]
par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
---------------^
nf_ncdf.f90(255): warning #7319: This argument's data type is incompatible with
this intrinsic procedure; procedure assumed EXTERNAL. [IAND]
par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
---------------^
nf_ncdf.f90(255): error #6363: The intrinsic data types of the arguments must
be the same. [IAND]
par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
--------------------------^
nf_ncdf.f90(255): error #6404: This name does not have a type, and must have an
explicit type. [IAND]
par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
----------^
nf_ncdf.f90(257): error #6404: This name does not have a type, and must have an
explicit type. [NF90_MPIPOSIX]
par = iand(NF90_MPIPOSIX,this%mode) == NF90_MPIPOSIX
---------------^
nf_ncdf.f90(259): error #6404: This name does not have a type, and must have an
explicit type. [NF90_PNETCDF]
par = iand(NF90_PNETCDF,this%mode) == NF90_PNETCDF
---------------^
nf_ncdf.f90(295): error #6404: This name does not have a type, and must have an
explicit type. [NF90_64BIT_OFFSET]
this%mode = IOR(this%mode,NF90_64BIT_OFFSET)
---------------------------------^
nf_ncdf.f90(295): error #6363: The intrinsic data types of the arguments must
be the same. [IOR]
this%mode = IOR(this%mode,NF90_64BIT_OFFSET)
---------------------------------^
nf_ncdf.f90(309): error #6404: This name does not have a type, and must have an
explicit type. [NF90_SHARE]
if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
-----------------------^
nf_ncdf.f90(309): warning #7319: This argument's data type is incompatible with
this intrinsic procedure; procedure assumed EXTERNAL. [IAND]
if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
-----------------------^
nf_ncdf.f90(309): error #6363: The intrinsic data types of the arguments must
be the same. [IAND]
if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
----------------------------------^
nf_ncdf.f90(309): error #6404: This name does not have a type, and must have an
explicit type. [IAND]
if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
------------------^
nf_ncdf.f90(350): error #6404: This name does not have a type, and must have an
explicit type. [NF90_NETCDF4]
if ( iand(NF90_NETCDF4,this%mode) == NF90_NETCDF4 ) then
--------------^
nf_ncdf.f90(350): warning #7319: This argument's data type is incompatible with
this intrinsic procedure; procedure assumed EXTERNAL. [IAND]
if ( iand(NF90_NETCDF4,this%mode) == NF90_NETCDF4 ) then
--------------^
nf_ncdf.f90(350): error #6363: The intrinsic data types of the arguments must
be the same. [IAND]
if ( iand(NF90_NETCDF4,this%mode) == NF90_NETCDF4 ) then
---------------------------^
nf_ncdf.f90(350): error #6404: This name does not have a type, and must have an
explicit type. [IAND]
if ( iand(NF90_NETCDF4,this%mode) == NF90_NETCDF4 ) then
---------^
nf_ncdf.f90(361): error #6404: This name does not have a type, and must have an
explicit type. [NF90_CREATE]
call ncdf_err(nf90_create(filename, this%mode , this%f_id), &
---------------------^
nf_ncdf.f90(386): warning #7319: This argument's data type is incompatible with
this intrinsic procedure; procedure assumed EXTERNAL. [IAND]
if ( iand(NF90_NETCDF4,this%mode) == NF90_NETCDF4 ) then
--------------^
nf_ncdf.f90(386): error #6363: The intrinsic data types of the arguments must
be the same. [IAND]
if ( iand(NF90_NETCDF4,this%mode) == NF90_NETCDF4 ) then
---------------------------^
nf_ncdf.f90(386): error #6404: This name does not have a type, and must have an
explicit type. [IAND]
if ( iand(NF90_NETCDF4,this%mode) == NF90_NETCDF4 ) then
---------^
nf_ncdf.f90(400): error #6404: This name does not have a type, and must have an
explicit type. [NF90_NOWRITE]
this%mode = IOR(this%mode,NF90_NOWRITE)
---------------------------------^
nf_ncdf.f90(400): error #6363: The intrinsic data types of the arguments must
be the same. [IOR]
this%mode = IOR(this%mode,NF90_NOWRITE)
---------------------------------^
nf_ncdf.f90(405): error #6404: This name does not have a type, and must have an
explicit type. [NF90_OPEN]
call ncdf_err(nf90_open(filename, this%mode , this%f_id), &
---------------------^
nf_ncdf.f90(416): error #6404: This name does not have a type, and must have an
explicit type. [NF90_INQ_GRP_FULL_NCID]
call ncdf_err(nf90_inq_grp_full_ncid(this%f_id, trim(this%grp), this%id))
---------------------^
nf_ncdf.f90(621): error #6404: This name does not have a type, and must have an
explicit type. [NF90_CLOSE]
call ncdf_err(nf90_close(this%f_id),"Closing NetCDF file: "//this)
------------------^
nf_ncdf.f90(647): error #6632: Keyword arguments are invalid without an
explicit interface. [FORMATNUM]
call ncdf_err(nf90_inquire(this%id,ldims,lvars,latts,formatNum=lformat), &
---------------------------------------------------------^
nf_ncdf.f90(647): error #6404: This name does not have a type, and must have an
explicit type. [NF90_INQUIRE]
call ncdf_err(nf90_inquire(this%id,ldims,lvars,latts,formatNum=lformat), &
------------------^
nf_ncdf.f90(656): error #6632: Keyword arguments are invalid without an
explicit interface. [NAME]
call ncdf_err(nf90_inquire_dimension(this%id,i,name=key))
---------------------------------------------------------^
nf_ncdf.f90(656): error #6404: This name does not have a type, and must have an
explicit type. [NF90_INQUIRE_DIMENSION]
call ncdf_err(nf90_inquire_dimension(this%id,i,name=key))
------------------------^
nf_ncdf.f90(662): error #6404: This name does not have a type, and must have an
explicit type. [NF90_GLOBAL]
call get_atts_id(this,NF90_GLOBAL,dict_att)
-----------------------------^
nf_ncdf.f90(3017): catastrophic error: Too many errors, exiting
compilation aborted for nf_ncdf.f90 (code 1)
make[2]: *** [nf_ncdf.o] Error 1
make[2]: Leaving directory
`/projects/acad/ucl-naps/software/transiesta/4.1_b1_NETCDF/src/Obj/NCDF/src'
make[1]: *** [lib] Error 2
make[1]: Leaving directory
`/projects/acad/ucl-naps/software/transiesta/4.1_b1_NETCDF/src/Obj/NCDF'
make: *** [libncdf.a] Error 2
