Just remember that you do not want to use a journaling fs on an USB other than jffs2. Even so, creating separate partitions on an averaged-size flash device (remember there are 64GB ones, if we exclude CF), I surmise, will decrease the performance (udev has to load different modules to create the device).
I also advise you to bind /tmp, /var/tmp on tmpfs to reduce disk I/O. You can bind the entire /var (or /var/cache), but it's risky since you don't know how much space it'd need and we commonly have 1-4GB of RAM these days.
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