Hi Navin, Was this working earlier or is this the first time are you trying ? Are you using pam module ? if yes, try disabling the pam module and see if it works.
Thanks Sathish On Thu, Jun 4, 2020 at 10:47 PM navin srivastava <navin.alt...@gmail.com> wrote: > Hi Team, > > i am seeing a weird issue in my environment. > one of the gaussian job is failing with the slurm within a minute after it > go for the execution without writing anything and unable to figure out the > reason. > The same job works fine without slurm on the same node. > > slurmctld.log > > [2020-06-03T19:14:33.170] debug: Job 1357498 has more than one partition > (normal)(21052) > [2020-06-03T19:14:33.170] debug: Job 1357498 has more than one partition > (normalGPUsmall)(21052) > [2020-06-03T19:14:33.170] debug: Job 1357498 has more than one partition > (normalGPUbig)(21052) > [2020-06-03T19:15:12.497] debug: sched: JobId=1357498. State=PENDING. > Reason=Priority, Priority=21052. > Partition=normal,normalGPUsmall,normalGPUbig. > [2020-06-03T19:15:12.497] debug: sched: JobId=1357498. State=PENDING. > Reason=Priority, Priority=21052. > Partition=normal,normalGPUsmall,normalGPUbig. > [2020-06-03T19:15:12.497] debug: sched: JobId=1357498. State=PENDING. > Reason=Priority, Priority=21052. > Partition=normal,normalGPUsmall,normalGPUbig. > [2020-06-03T19:16:12.626] debug: sched: JobId=1357498. State=PENDING. > Reason=Priority, Priority=21052. > Partition=normal,normalGPUsmall,normalGPUbig. > [2020-06-03T19:17:12.753] debug: sched: JobId=1357498. State=PENDING. > Reason=Priority, Priority=21052. > Partition=normal,normalGPUsmall,normalGPUbig. > [2020-06-03T19:18:12.882] debug: sched: JobId=1357498. State=PENDING. > Reason=Priority, Priority=21052. > Partition=normal,normalGPUsmall,normalGPUbig. > [2020-06-03T19:19:13.633] sched: Allocate JobID=1357498 NodeList=oled4 > #CPUs=4 Partition=normal > [2020-06-04T12:25:36.961] _job_complete: JobID=1357498 State=0x1 NodeCnt=1 > WEXITSTATUS 2 > [2020-06-04T12:25:36.961] SLURM Job_id=1357498 Name=job1 Ended, Run time > 17:06:23, FAILED, ExitCode 2 > [2020-06-04T12:25:36.962] _job_complete: JobID=1357498 State=0x8005 > NodeCnt=1 done > > slurmd.log > > [2020-06-04T12:22:43.712] [1357498.batch] debug: jag_common_poll_data: > Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time > 164642.840000(164537+105) > [2020-06-04T12:23:13.712] [1357498.batch] debug: jag_common_poll_data: > Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time > 164762.820000(164657+105) > [2020-06-04T12:23:43.712] [1357498.batch] debug: jag_common_poll_data: > Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time > 164882.810000(164777+105) > [2020-06-04T12:24:13.712] [1357498.batch] debug: jag_common_poll_data: > Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time > 165002.790000(164897+105) > [2020-06-04T12:24:43.712] [1357498.batch] debug: jag_common_poll_data: > Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time > 165122.770000(165016+105) > [2020-06-04T12:25:13.713] [1357498.batch] debug: jag_common_poll_data: > Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time > 165242.750000(165136+105) > [2020-06-04T12:25:36.955] [1357498.batch] task 0 (64084) exited with exit > code 2. > [2020-06-04T12:25:36.955] [1357498.batch] debug: task_p_post_term: > affinity 1357498.4294967294, task 0 > [2020-06-04T12:25:36.960] [1357498.batch] debug: > step_terminate_monitor_stop signaling condition > [2020-06-04T12:25:36.960] [1357498.batch] job 1357498 completed with > slurm_rc = 0, job_rc = 512 > [2020-06-04T12:25:36.960] [1357498.batch] sending > REQUEST_COMPLETE_BATCH_SCRIPT, error:0 status 512 > [2020-06-04T12:25:36.961] [1357498.batch] debug: Message thread exited > [2020-06-04T12:25:36.962] [1357498.batch] done with job > [2020-06-04T12:25:36.962] debug: task_p_slurmd_release_resources: > affinity jobid 1357498 > [2020-06-04T12:25:36.962] debug: credential for job 1357498 revoked > [2020-06-04T12:25:36.963] debug: Waiting for job 1357498's prolog to > complete > [2020-06-04T12:25:36.963] debug: Finished wait for job 1357498's prolog > to complete > [2020-06-04T12:25:36.963] debug: [job 1357498] attempting to run epilog > [/etc/slurm/slurm.epilog.clean] > [2020-06-04T12:25:37.254] debug: completed epilog for jobid 1357498 > [2020-06-04T12:25:37.254] debug: Job 1357498: sent epilog complete msg: > rc = 0 > > any suggestion will be welcome to troubleshoot this issue further. > > Regards > Navin. > > > > -- Regards..... Sathish