TPP 4.1.0 still have the same problems. It can convert MASCOT .dat to pepxml successfully.
But, if I open the pepxml, web display js errors: (under Vista) Line: 417 Char: 7 Error: invalid argument (under windows 2000 server) Lline: 417 Char: 7 Error: Permission denied also get errors with click ions link: Error - cannot read spectrum; tried direct .dta, from mzXML/mzData and from .tgz Here is a new problem when analyzing peptide with TPP 4.1.0, command errors with: Output Files c:/Inetpub/wwwroot/ISB/data/interact.shtml [ View ] Command 1 [Wed Nov 12 11:15:55 2008] [ Show / Hide ] run_in c:/Inetpub/wwwroot/ISB/data; xinteract -Ninteract.pep.xml - p0.05 -l7 -x20 -O c:/Inetpub/wwwroot/ISB/data/F001262.pep.xml -------------------------------------------------------------------------------- xinteract (TPP v4.1 JETSTREAM rev 0, Build 200811101627 (MinGW)) running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "c:/ Inetpub/wwwroot/ISB/data/F001262.pep.xml" -L"7"" file 1: c:/Inetpub/wwwroot/ISB/data/F001262.pep.xml processed altogether 480 results results written to file c:/Inetpub/wwwroot/ISB/data/interact.pep.xml direct your browser to http://localhost/ISB/data/interact.shtml command completed in 1 sec running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05 EXTRAITRS=20" (MASCOT) results for charge 1: 1 id tot and 0 adj scores error: -1.0 ion score command "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05 EXTRAITRS=20" failed: Operation not permitted command "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05 EXTRAITRS=20" exited with non-zero exit code: 1 QUIT - the job is incomplete Command FAILED So I cannot go on analyzing protein. --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
