spctools-discuss

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2020/10/21 Re: [spctools-discuss] maximum fasta file size AZIZ ALNAKLI
2020/10/21 RE: [spctools-discuss] maximum fasta file size 'Eric Deutsch' via spctools-discuss
2020/10/21 [spctools-discuss] Run TPP on linux without root Jieyi Xiong
2020/10/20 [spctools-discuss] maximum fasta file size AZIZ ALNAKLI
2020/10/20 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
2020/10/20 Re: [spctools-discuss] SpectraST LibraryBuilding Decoys Juergen Bartel
2020/10/19 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'David Shteynberg' via spctools-discuss
2020/10/19 RE: [spctools-discuss] SpectraST LibraryBuilding Decoys 'Eric Deutsch' via spctools-discuss
2020/10/19 [spctools-discuss] SpectraST LibraryBuilding Decoys Juergen Bartel
2020/10/17 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
2020/10/16 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
2020/10/13 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'David Shteynberg' via spctools-discuss
2020/10/13 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
2020/10/12 RE: [spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8 'Eric Deutsch' via spctools-discuss
2020/10/11 [spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8 Law
2020/10/09 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'Luis Mendoza' via spctools-discuss
2020/10/09 [spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8 Wenhao
2020/10/07 [spctools-discuss] TPP 5.2.0 installation error CentOS 7.8 Wenhao
2020/10/06 [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
2020/10/05 Re: [spctools-discuss] X!Tandem- Help please Robert Winkler
2020/10/05 Re: [spctools-discuss] LFQ Robert Winkler
2020/10/02 Re: [spctools-discuss] LFQ 'Luis Mendoza' via spctools-discuss
2020/10/02 Re: [spctools-discuss] Converting Orbitrap Eclipse files to mzML Laura Muehlbauer
2020/10/02 [spctools-discuss] LFQ [email protected]
2020/10/01 Re: [spctools-discuss] X!Tandem- Help please [email protected]
2020/10/01 Re: [spctools-discuss] X!Tandem- Help please [email protected]
2020/10/01 Re: [spctools-discuss] Converting Orbitrap Eclipse files to mzML Jason Winget
2020/09/30 Re: [spctools-discuss] Converting Orbitrap Eclipse files to mzML 'David Shteynberg' via spctools-discuss
2020/09/30 [spctools-discuss] Converting Orbitrap Eclipse files to mzML Laura Muehlbauer
2020/09/30 Re: [spctools-discuss] X!Tandem- Help please Jimmy Eng
2020/09/30 Re: [spctools-discuss] X!Tandem- Help please Robert Winkler
2020/09/29 [spctools-discuss] X!Tandem- Help please [email protected]
2020/09/28 [spctools-discuss] Re: X!Tandem taking too long [email protected]
2020/09/28 [spctools-discuss] Re: X!Tandem taking too long [email protected]
2020/09/28 [spctools-discuss] X!Tandem taking too long [email protected]
2020/09/25 Re: [spctools-discuss] ProtyQuant for comparing TPP samples (.pepXML) 'Luis Mendoza' via spctools-discuss
2020/09/25 [spctools-discuss] ProtyQuant for comparing TPP samples (.pepXML) Robert
2020/09/16 Re: [spctools-discuss] Crosslink FDR from PeptideProphet Lindsey Ulmer
2020/09/16 Re: [spctools-discuss] Crosslink FDR from PeptideProphet 'David Shteynberg' via spctools-discuss
2020/09/16 [spctools-discuss] Crosslink FDR from PeptideProphet Lindsey Ulmer
2020/09/15 [spctools-discuss] Consensus spectral library with split RT Annie Ha
2020/09/14 Re: [spctools-discuss] Comet fixed and variable modifications Jimmy Eng
2020/09/14 [spctools-discuss] Comet fixed and variable modifications Francesco Demetrio Lofaro
2020/09/14 [spctools-discuss] Unique peptide Francesco Demetrio Lofaro
2020/09/07 Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio 'Alastair Skeffington' via spctools-discuss
2020/08/31 Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio 'Alastair Skeffington' via spctools-discuss
2020/08/26 Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio 'David Shteynberg' via spctools-discuss
2020/08/26 Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio 'Alastair Skeffington' via spctools-discuss
2020/08/25 Re: [spctools-discuss] Query related to protein abundances in TPP Mehar Un Nissa
2020/08/25 Re: [spctools-discuss] Query related to protein abundances in TPP Robert Winkler
2020/08/25 [spctools-discuss] Query related to protein abundances in TPP Mehar Un Nissa
2020/08/17 Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio 'Alastair Skeffington' via spctools-discuss
2020/08/17 Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio 'David Shteynberg' via spctools-discuss
2020/08/17 Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio 'Alastair Skeffington' via spctools-discuss
2020/08/11 Re: [spctools-discuss] Query related to PTMprophet results in TPP 'Luis Mendoza' via spctools-discuss
2020/08/09 Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer RS
2020/08/07 [spctools-discuss] Query related to PTMprophet results in TPP Mehar Un Nissa
2020/08/06 Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio 'Alastair Skeffington' via spctools-discuss
2020/08/05 Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio 'David Shteynberg' via spctools-discuss
2020/08/05 [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio 'Alastair Skeffington' via spctools-discuss
2020/08/03 [spctools-discuss] 15N/14N guidence 'Alastair Skeffington' via spctools-discuss
2020/07/29 Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI Kate Mostovenko
2020/07/29 Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI Jimmy Eng
2020/07/29 Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI Jimmy Eng
2020/07/29 Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI Kate Mostovenko
2020/07/29 Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI Jimmy Eng
2020/07/29 Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI Kate Mostovenko
2020/07/27 Re: [spctools-discuss] New to TPP: finding FDR corresponding to probability 'David Shteynberg' via spctools-discuss
2020/07/27 [spctools-discuss] New to TPP: finding FDR corresponding to probability RS
2020/07/24 [spctools-discuss] TMT labeling efficiency test Josh Yu
2020/07/24 Re: [spctools-discuss] Are these crapome? Josh Yu
2020/07/21 Re: [spctools-discuss] New at TTP. Problem with PSM validation Carlos Humberto Paván
2020/07/20 Re: [spctools-discuss] New at TTP. Problem with PSM validation 'David Shteynberg' via spctools-discuss
2020/07/20 Re: [spctools-discuss] New at TTP. Problem with PSM validation Carlos Humberto Paván
2020/07/20 Re: [spctools-discuss] New at TTP. Problem with PSM validation 'David Shteynberg' via spctools-discuss
2020/07/19 [spctools-discuss] Re: New at TTP. Problem with PSM validation Carlos Humberto Paván
2020/07/18 [spctools-discuss] New at TTP. Problem with PSM validation Carlos Humberto Paván
2020/07/16 [spctools-discuss] QualScore - 0 dtas written Miguel Cosenza
2020/07/11 Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer RS
2020/07/09 RE: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer 'Eric Deutsch' via spctools-discuss
2020/07/08 Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer RS
2020/07/07 RE: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer 'Eric Deutsch' via spctools-discuss
2020/07/07 Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer RS
2020/07/07 RE: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer 'Eric Deutsch' via spctools-discuss
2020/07/07 [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer RS
2020/07/07 [spctools-discuss] SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer RS
2020/06/25 RE: [spctools-discuss] Re: Specifying comet param file in batch file Mark Athanason
2020/06/25 [spctools-discuss] Re: Specifying comet param file in batch file Jimmy Eng
2020/06/25 [spctools-discuss] Specifying comet param file in batch file Mark Athanason
2020/06/23 [spctools-discuss] Re: Problem with SpectraST [email protected]
2020/06/10 Re: [spctools-discuss] Spectral library generation Aaron Robinson
2020/06/10 Re: [spctools-discuss] Spectral library generation Srinivas Srikanth
2020/06/09 [spctools-discuss] Re: Percolator Error in TPP Gabrielle H
2020/06/09 Re: [spctools-discuss] Percolator Error in TPP Gabrielle H
2020/06/09 Re: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command Javan Okendo
2020/06/09 RE: [spctools-discuss] Spectral library generation 'Eric Deutsch' via spctools-discuss
2020/06/09 RE: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command 'Eric Deutsch' via spctools-discuss
2020/06/09 Re: [spctools-discuss] Percolator Error in TPP 'Luis Mendoza' via spctools-discuss
2020/06/09 Re: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command Phillip Wilmarth
2020/06/09 [spctools-discuss] Re: Percolator Error in TPP Gabrielle H
2020/06/09 Re: [spctools-discuss] Percolator Error in TPP Gabrielle H
2020/06/09 Re: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command Javan Okendo
2020/06/08 [spctools-discuss] Spectral library generation Srinivas Srikanth
2020/06/08 [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command Phillip Wilmarth
2020/06/08 [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command Jimmy Eng
2020/06/08 [spctools-discuss] Re: Percolator Error in TPP Jimmy Eng
2020/06/08 Re: [spctools-discuss] Percolator Error in TPP 'Luis Mendoza' via spctools-discuss
2020/06/08 [spctools-discuss] Percolator Error in TPP Gabrielle H
2020/06/03 [spctools-discuss] Re: Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib. Henry Lam
2020/06/03 [spctools-discuss] Re: Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib. Henry Lam
2020/06/01 [spctools-discuss] Trans-Proteomic Pipeline workshop at ASMS Tuesday 10am Central time 'Eric Deutsch' via spctools-discuss
2020/05/28 [spctools-discuss] Re: Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib. Wenguang
2020/05/27 [spctools-discuss] Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib. Ray
2020/05/27 Re: [spctools-discuss] TPP Error Javan Okendo
2020/05/27 [spctools-discuss] TPP Error Nimai Charan Mahanandia
2020/05/09 [spctools-discuss] Re: ASAPRatio for 15N? Carlo de Oliveira Martins
2020/04/27 RE: [spctools-discuss] SpectrasT can't recognize Protein N-term acetylation modification 'Eric Deutsch' via spctools-discuss
2020/04/25 [spctools-discuss] SpectrasT can't recognize Protein N-term acetylation modification RayS
2020/04/15 Re: [spctools-discuss] Kojak File not Found Michael Hoopmann
2020/04/13 Re: [spctools-discuss] Help in geneting Sequest and X!Tandem parameter files Jimmy Eng
2020/04/13 Re: [spctools-discuss] Help in geneting Sequest and X!Tandem parameter files Javan Okendo
2020/04/13 Re: [spctools-discuss] Help in geneting Sequest and X!Tandem parameter files Jimmy Eng
2020/04/13 [spctools-discuss] Re: Error while running prophets with the comet results from searchGUI JAVAN OKENDO
2020/04/13 Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI Jimmy Eng
2020/04/13 Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI Javan Okendo
2020/04/13 [spctools-discuss] Re: Error while running prophets with the comet results from searchGUI JAVAN OKENDO
2020/04/13 Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI Jimmy Eng
2020/04/13 [spctools-discuss] Error while running prophets with the comet results from searchGUI JAVAN OKENDO
2020/04/13 [spctools-discuss] Help in geneting Sequest and X!Tandem parameter files JAVAN OKENDO
2020/04/07 Re: [spctools-discuss] PTMProphet MSFragger modification missing mass 'David Shteynberg' via spctools-discuss
2020/04/07 Re: [spctools-discuss] PTMProphet MSFragger modification missing mass Alex Zelter
2020/04/06 Re: [spctools-discuss] PTMProphet MSFragger modification missing mass 'David Shteynberg' via spctools-discuss
2020/04/06 [spctools-discuss] PTMProphet MSFragger modification missing mass Alex Zelter
2020/04/06 Re: [spctools-discuss] Kojak File not Found Michael Hoopmann
2020/04/06 Re: [spctools-discuss] Kojak File not Found Lindsey Ulmer
2020/03/30 Re: [spctools-discuss] Kojak File not Found 'Luis Mendoza' via spctools-discuss
2020/03/27 [spctools-discuss] Kojak File not Found Lindsey Ulmer
2020/03/26 [spctools-discuss] Re: ProteinProphet error Daniel Geiszler
2020/03/25 [spctools-discuss] ProteinProphet error Daniel Geiszler
2020/03/24 Re: [spctools-discuss] PTMProphet MSFragger modification mass discrepancy Alex Zelter
2020/03/18 Re: [spctools-discuss] PTMProphet MSFragger modification mass discrepancy 'David Shteynberg' via spctools-discuss
2020/03/18 Re: [spctools-discuss] PTMProphet MSFragger modification mass discrepancy Alex Zelter
2020/03/18 Re: [spctools-discuss] PTMProphet MSFragger modification mass discrepancy 'David Shteynberg' via spctools-discuss
2020/03/18 [spctools-discuss] PTMProphet MSFragger modification mass discrepancy Alex Zelter
2020/03/15 Re: [spctools-discuss] Problem installing TPP 5.2 on Windows 'David Shteynberg' via spctools-discuss
2020/03/15 [spctools-discuss] Problem installing TPP 5.2 on Windows RUI XU
2020/03/14 [spctools-discuss] Protein level FDR Tanner Tessier
2020/03/11 Re: [spctools-discuss] TPP 5.2 in Ubuntu 18.04 not showing plots/images in PepProphet nor ProtProphet models Alejandro
2020/03/09 Re: [spctools-discuss] irt issue Srinivas Srikanth
2020/03/09 Re: [spctools-discuss] No decoys found by IProphet 'Alastair Skeffington' via spctools-discuss
2020/03/09 Re: [spctools-discuss] TPP 5.2 in Ubuntu 18.04 not showing plots/images in PepProphet nor ProtProphet models 'Luis Mendoza' via spctools-discuss
2020/03/08 [spctools-discuss] TPP 5.2 in Ubuntu 18.04 not showing plots/images in PepProphet nor ProtProphet models Alejandro
2020/03/06 Re: [spctools-discuss] No decoys found by IProphet 'David Shteynberg' via spctools-discuss
2020/03/06 [spctools-discuss] Re: No decoys found by IProphet 'Alastair Skeffington' via spctools-discuss
2020/03/06 [spctools-discuss] No decoys found by IProphet 'Alastair Skeffington' via spctools-discuss
2020/03/05 Re: [spctools-discuss] Re: Query related to Lorikeet viewer PTMprophet results in TPP 'David Shteynberg' via spctools-discuss
2020/03/05 Re: [spctools-discuss] Re: Query related to Lorikeet viewer PTMprophet results in TPP 'Luis Mendoza' via spctools-discuss
2020/03/05 [spctools-discuss] Re: Query related to Lorikeet viewer PTMprophet results in TPP Mehar Un Nissa
2020/03/04 RE: [spctools-discuss] irt issue 'Eric Deutsch' via spctools-discuss
2020/03/03 [spctools-discuss] Query related to Lorikeet viewer PTMprophet results in TPP Mehar Un Nissa
2020/03/03 [spctools-discuss] irt issue Srinivas Srikanth
2020/02/20 Re: [spctools-discuss] Failed, error code 256 when I want to run LIBRA with TPP 'Luis Mendoza' via spctools-discuss
2020/02/20 Re: [spctools-discuss] Failed, error code 256 when I want to run LIBRA with TPP Cindy Dieryckx
2020/02/19 [spctools-discuss] QualScore input format Sebastien Leblanc
2020/02/17 Re: [spctools-discuss] Failed, error code 256 when I want to run LIBRA with TPP 'David Shteynberg' via spctools-discuss
2020/02/17 [spctools-discuss] Failed, error code 256 when I want to run LIBRA with TPP Cindy Dieryckx
2020/02/05 Re: [spctools-discuss] all Kojak identified unlinked PSMs assigned a probability of 0 TPP/Kojak Alex Zelter
2020/02/04 Re: [spctools-discuss] mzIDentML [email protected]
2020/02/04 RE: [spctools-discuss] mzIDentML 'Michael Hoopmann' via spctools-discuss
2020/02/04 [spctools-discuss] mzIDentML [email protected]
2020/02/03 Re: [spctools-discuss] all Kojak identified unlinked PSMs assigned a probability of 0 TPP/Kojak 'David Shteynberg' via spctools-discuss
2020/02/03 [spctools-discuss] all Kojak identified unlinked PSMs assigned a probability of 0 TPP/Kojak Alex Zelter
2020/01/28 Re: [spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak Alex Zelter
2020/01/28 Re: [spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak 'David Shteynberg' via spctools-discuss
2020/01/28 Re: [spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak 'David Shteynberg' via spctools-discuss
2020/01/28 [spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak Alex Zelter
2020/01/27 Re: [spctools-discuss] Query related to filtering PTMprophet results in TPP 'David Shteynberg' via spctools-discuss
2020/01/27 [spctools-discuss] Query related to filtering PTMprophet results in TPP Mehar Un Nissa
2020/01/22 [spctools-discuss] Upcoming Trans-Proteomic Pipeline (TPP) courses 'Eric Deutsch' via spctools-discuss
2020/01/13 [spctools-discuss] Installation Error Xavier Alexander M
2020/01/05 Re: [spctools-discuss] Query related to PTMprophet tool in TPP 'David Shteynberg' via spctools-discuss
2020/01/05 [spctools-discuss] Query related to PTMprophet tool in TPP Mehar Un Nissa
2019/12/23 [spctools-discuss] Spectra indexing for Waters DDA data David Schmidt
2019/12/16 Re: [spctools-discuss] Interpretation of stats from pepXML viewer 'Alastair Skeffington' via spctools-discuss
2019/12/13 RE: [spctools-discuss] Interpretation of stats from pepXML viewer 'Eric Deutsch' via spctools-discuss
2019/12/13 Re: [spctools-discuss] Interpretation of stats from pepXML viewer Jimmy Eng
2019/12/13 RE: [spctools-discuss] Interpretation of stats from pepXML viewer 'Eric Deutsch' via spctools-discuss
2019/12/13 [spctools-discuss] Interpretation of stats from pepXML viewer 'Alastair Skeffington' via spctools-discuss
2019/12/06 RE: [spctools-discuss] Perl library errors: Centos 7 'Eric Deutsch' via spctools-discuss
2019/12/05 Re: [spctools-discuss] Perl library errors: Centos 7 Shagun Gupta
2019/12/03 RE: [spctools-discuss] Perl library errors: Centos 7 'Eric Deutsch' via spctools-discuss
2019/12/03 Re: [spctools-discuss] Perl library errors: Centos 7 Shagun Gupta
2019/12/02 RE: [spctools-discuss] Perl library errors: Centos 7 'Eric Deutsch' via spctools-discuss
2019/12/02 Re: [spctools-discuss] Perl library errors: Centos 7 Shagun Gupta
2019/11/22 RE: [spctools-discuss] Perl library errors: Centos 7 'Eric Deutsch' via spctools-discuss
2019/11/22 [spctools-discuss] Perl library errors: Centos 7 Shagun Gupta
2019/11/21 Re: [spctools-discuss] problem installing TPP 5.2 on CentOS Linux release 7.3.1611 Shagun Gupta
2019/11/18 Re: [spctools-discuss] Kojak + PeptideProphet FDR cutoff Thomas Gossenreiter
2019/11/15 Re: [spctools-discuss] Kojak + PeptideProphet FDR cutoff 'David Shteynberg' via spctools-discuss
2019/11/15 Re: [spctools-discuss] Kojak + PeptideProphet FDR cutoff Thomas Gossenreiter