Hi Kris, If everything else is working (using the TPP GUI, etc), it's probably not a webserver issue. It sounds like a pepXMLViewer issue. It's a program just like any other, and sometimes crashes, especially if the pepXML has missing elements, etc. It will be a little more resilient to crashes in the upcoming 4.2.0 release, which we're now aiming for a release in the next two weeks.
I would take a quick look at the usual easy things,such as bad filenames (containing spaces or other illegal characters) or strange characters in your fasta file. -Natalie On Tue, Feb 10, 2009 at 2:03 PM, Kris <[email protected]> wrote: > > Hi, > > I have an earlier post about a problem I had with running SEQUEST. > Basically, I have the Proteomics Browser Suite from Thermo running on > IIS on port 80. > > I installed the latest TPP using a its version of active perl. I > configured TPP so that it accesses the wwwroot folder off of the D: > drive. I need to have all my data saved to this secondary drive. I > also configured the apache server so that it runs off of port 8888. > This seems to work fine for the TPP. I can convert mzxml files, raw > files, run sequest, and make pepxml files. But when I try to run > peptide prophet, it gets stuck when it is running PepXMLViewer. > > I tried running that last line of code through command line, and I get > a parsing error shortly after line 2000 of the view being run with > PepXMLViewer. > > I believe the errors may have something to do with the webservers. > Since IIS is running on the port that apache is normally set to, I > believe that this may be causing difficulties in viewing the peptide > prophet results. I believe the error I got was error # 36 if that > helps. I can also post the output of the command line error if that > would help. > > If anyone has any suggestions, please let me know, > > -Kris > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
