Hello Arand, You'll need to start by converting the Shimadzu-specific instrument files to mzXML or mzML files in order to use the TPP tools. The SPC/TPP tools do not support this directly, but someone posted to our list mentioning the Mass++ program which is advertised to do this:
http://groups.google.com/group/spctools-discuss/browse_thread/thread/ff4ee5d26b5cdba0/0af653943a593a6f?lnk=gst&q=Shimadzu#0af653943a593a6f Please let us know what your experiences are with this program, Natalie On Tue, Feb 17, 2009 at 3:52 AM, Research_anand <anand1...@gmail.com> wrote: > > Hi all , > > I have been trying to upload and analyze a single protein MSMS CID > data retrieved from shimadzu instrument and I am unable to run the > pipeline.The pipeline fails at the protein prophet level and cites > error message "No data quitting". I tried also converting mzXML files > to dta as well as mgf files through mzXML2Search but conversion was > impossible. > > At this juncture I am unable to proceed further because reason I do > not know.Kindly suggest also any test data set that can be run on TPP > as a standard. > > Is there any correction that I have to induce before running TPP on > the mzXML data file. > > > Regards & Thanks > > Anand > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
