Hi Thomas, Because iProphet is so new not all of the links will work with it without some tweaks. Would you mind compressing the problem data and sending it to us through our FTP server so we can correct the broken links. Instructions for uploading data to our ftp server can be found on the wiki.
Thanks, -David On Fri, May 22, 2009 at 11:45 AM, thomas <[email protected]> wrote: > > Hi all, I am trying to run iPROPHET within the TPP version 4.2 rev1 > (build 200904071723). I tried to combine 4 different experiments each > consisting of 15 gel slices/LC-runs and did 4 separate peptideprophet > analyses using the -E option (-Eexp1, -Eexp2...). If I run > ProteiProphet on these 4 interact.pep.xml files all works fine and I > get xpress and asap ration values. If I run iProphet on these 4 files, > new iP probability values are calculated, which make sense to me. So > it looks like iProphet works fine. ProteinProphet using this output > file also looks ok. Xpress values and asap ratio values are identical > to the values calculated without iProphet, but if I want to view the > asap ratios, I get the following error message: > > ASAPCGIDisplay.cgi encountered a problem and needs to close. > > Do I use the -E option in a wrong way? > > Thomas > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
