Hi, I am trying to run the xinteract on the omssa pep.xml output files. my omssa's version is 2.1.4, my TPP version is 4.2.1. But I couldn't get it through. I search the old post, there is a similar post, but the problem was solved by specifying enzyme to xinteract.
I tried it, but is still not working. InteractParse went through, but PeptideProphetParser got stuck by a segmentation fault. Any help would be greatly appreciated! Many Thanks, Ping ***** output for interactParser and PeptideProphetParser InteractParser 'interact.pep.xml' 'omssa.pep.xml' -L'7' -E'trypsin' -C -P file 1: ParoSaliv_SHAM_03.pep.xml processed altogether 2623 results PeptideProphetParser 'interact.pep.xml' DECOY=DECOY MINPROB=0 NONPARAM Using Decoy Label "DECOY". Using non-parametric distributions (OMSSA) (minprob 0) WARNING!! The discriminant function for OMSSA is not yet complete. It is presented here to help facilitate trial and discussion. Reliance on this code for publishable scientific results is not recommended. init with OMSSA Trypsin MS Instrument info: Manufacturer: UNKNOWN, Model: UNKNOWN, Ionization: UNKNOWN, Analyzer: UNKNOWN, Detector: UNKNOWN PeptideProphet (TPP v4.2 JETSTREAM rev 1, Build 200905131510 (linux)) akel...@isb read in 75 1+, 1790 2+, 749 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra. Initialising statistical models ... WARNING: No decoys with label DECOY were found in this dataset. reverting to fully unsupervised method. Iterations: .........10.........20 Segmentation fault --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
