Hi Jake,
Thanks for your response. I tried -o T option with formatdb, and rerun
the omssacl, but got this error message.
"omssacl.cpp", line 279: Fatal: Exception in COMSSA::Run: NCBI C++
Exception:
"/net/napc02/vol/pubchem/Users/lewisg/checkin/cxx/src/serial/
serialobject.cpp", line 228: Error: NCBI-BlastDL::Blast-def-line.title
Ping
On Jul 3, 3:46 am, Jake W <[email protected]> wrote:
> One solution to this is to use the indexing option ("-o T") in
> formatdb when formatting your BLAST database for OMSSA searching. In
> my experience, that will result in OMSSA writing the first word of the
> protein definition line to the "protein" attribute in the pepXML.
> Without the -o option, OMSSA just puts a number in the "protein="
> attribute indicating that the hit came from the nth entry in the
> database.
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