Hello,
Yes, this is the only supported way to analyze Sequest results in the TPP.

For a more efficient workflow, you may want to have a look at the mspire
project.  Specifically, they provide a .srf to pepXML converter, but we have
not evaluated or support it.

http://mspire.rubyforge.org/spec_id/conversions.html

Cheers,
--Luis


On Mon, Jun 29, 2009 at 10:56 AM, Leger, Daniel (R1B)
<[email protected]>wrote:

>
> I'm new to this so I apologize if these are stupid questions. Is using DTA
> and OUT files the only way to feed Sequest data to TPP? I mean having to
> generate thousands of dta and out files for each sample we want analyzed by
> TPP seems very inefficient. Is there another way or at least a way to
> streamline the process? Thanks.
>

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