Hi Oded, If you're using new features like Omssa-with-TPP, you should really update to the release version of 4.3.0. Yours is 4 months out of date.
Best, Natalie On Wed, Aug 12, 2009 at 12:49 PM, Oded<[email protected]> wrote: > > Hi, > I would like to use Omssa with the TPP and couldn't find much > documentation (BTE it seems that the Spctools search option is only > showing results from the last few months) other than this link in the > wiki: > http://tools.proteomecenter.org/wiki/index.php?title=Expert_search_and_TPP_usage > that hint that it is possible to search directly mzXML files. > Is that actually possible and if so how it should be defined? > I was trying to search mgf input and to use peptide prophet with omssa > pepXML output following the recent advice re defining trypsin as the > enzyme. I was able to get interact to work but the all the hits got pp > score of -2 and in addition I wasn't able to watch any of the spectra > (got an error message). > I'm using TPP v4.3 unstable dev prerelease, built on 20090409 on a > Mac. > In additon I think it might be very usefull for future users, if > somebody who is succesfully using Omssa will post his/her parameters > file as a template or post a link that can be used as a starting point > for setting the search parameters (so far the best info I got is > this:http://proteomicsresource.washington.edu/omssa.php). > Many thanks, > Oded > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
