Oded wrote: > Thanks - that is what I was looking for. > Have you tried to use pepXML input for the search parameters (similar > to the one used by Omssa browser)? > Nope, I'm afraid I've only called omssacl with command line params.
Regarding the parameters, I have a recollection that using -he to specify a high e-value cut off is important so that peptide prophet has enough poor quality matches to fit the negative model. DT -- Dr. David Trudgian Bioinformatician in Proteomics University of Oxford Mon-Thu: CCMP, Roosevelt Drive Tel: (+44) (01865 2)87807 Friday : Dunn School of Pathology, S. Parks Rd. Tel: (+44) (01865 2)75557 --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
