Hi Kristian, thank you for your help. i changed the letter of the drive in the environment variables, but when i wanted to start the gui i just received a message that the access to the folder is denied.
i have the following setup of programs and data at the moment: Perl / apache-Server on c:\ MS-Data i want to process: G:\Data\ESI\ tpp: G:\Inetpub\tpp-bin\ wwwroot: G:\Inetpub\wwwroot\ maybe there is any flaw in this setup already? if anyone could give me a hint about how to edit httpd.conf and tpp_gui.pl i would be really glad! thanks a lot in advance, johannes On 12 Aug., 18:06, Kristian <[email protected]> wrote: > From the start menu, go to Control Panel, System, Advanced, > Environment Variables. > > Near the end of the list is a variable called WEBSERVER_ROOT whose > value is c:\Inetpub\wwwroot > > Change the "c" to the new drive letter. RESTART YOUR MACHINE. That > should fix it. > > This was an issue on the cygwin-based TPP as well, but the Wiki does > not have this info. > > On Aug 11, 6:20 am, ZeiserMHH <[email protected]> wrote: > > > hello, > > > i moved my data-folder to another drive and changed the settings for > > the server root folder in tpp_gui.pl as well as in apache httpd.conf > > according to > > >http://tools.proteomecenter.org/wiki/index.php?title=TPP:Using_Petuni... > > > i can access the files in the new location and perform a database > > search with them. however, when i try running a peptide analysis with > > them i get several error messages regarding the new location and the > > command is not finished. instead pepxmlviewer.cgi runs at 100% cpu > > usage and seems not to come to an end. > > Is there any other file i need to edit except from tpp_gui.pl and > > httpd.conf? > > > please also see below the output of the task with the error messages. > > > Thank you for your help! > > > best regards, > > > Johannes > > > =============================== > > > # Commands for session 0F2NBY3WV on Tue Aug 11 14:41:29 2009 > > # BEGIN COMMAND BLOCK > > ###### BEGIN Command Execution ###### > > [Tue Aug 11 14:41:30 2009] EXECUTING: run_in G:/Daten/ESI/JZ/J090716/ > > Z11.D; c:\Inetpub\tpp-bin\xinteract -NZ11.pep.xml -p0.05 -l7 -Op -X- > > m0.2-nK,6-nR,10 -A-lRK-F-r0.2-mR166.11K134.11 G:/Daten/ESI/JZ/J090716/ > > Z11.D/Z11.tandem.pep.xml > > OUTPUT: > > > c:\Inetpub\tpp-bin\xinteract (TPP v4.3 JETSTREAM rev 0, Build > > 200908071234 (MinGW)) > > > running: "C:/Inetpub/tpp-bin/InteractParser "Z11.pep.xml" "G:/Daten/ > > ESI/JZ/J090716/Z11.D/Z11.tandem.pep.xml" -L"7"" > > warning: xsl file g:/daten/esi/jz/j090716/Z11.D/Z11.pep.xsl must begin > > with the WEBSERVER_ROOT path for use with a webserver. > > file 1: G:/Daten/ESI/JZ/J090716/Z11.D/Z11.tandem.pep.xml > > processed altogether 293 results > > problem (ph8): g:/Daten/ESI/JZ/J090716/Z11.D/Z11.pep.xml is not > > mounted under webserver root: c:/Inetpub/wwwroot/ > > command completed in 0 sec > > > running: "C:/Inetpub/tpp-bin/PeptideProphetParser "Z11.pep.xml" > > MINPROB=0.05" > > (X! Tandem) > > init with X! Tandem trypsin > > MS Instrument info: Manufacturer: Bruker Daltonics, Model: esquire, > > Ionization: ESI, Analyzer: Quadrupole Ion Trap, Detector: > > > PeptideProphet (TPP v4.3 JETSTREAM rev 0, Build 200908071234 > > (MinGW)) akel...@isb > > read in 0 1+, 190 2+, 102 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra. > > Initialising statistical models ... > > negmean = 0.0533258 > > negmean = 1 > > negmean = -0.2 > > negmean = -0.2 > > negmean = -0.2 > > negmean = -0.2 > > negmean = -0.2 > > Iterations: .........10.........20. > > WARNING: Mixture model quality test failed for charge (2+). > > WARNING: Mixture model quality test failed for charge (3+). > > model complete after 22 iterations > > command completed in 0 sec > > > running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i Z11.pep.xml" > > Analyzing Z11.pep.xml ... > > Parsing search results "G:/Daten/ESI/JZ/J090716/Z11.D/Z11 (X! > > Tandem)"... > > => Total of 0 hits. > > command completed in 1 sec > > > running: "C:/Inetpub/tpp-bin/XPressPeptideParser "Z11.pep.xml" -m0.2 - > > nK,6 -nR,10" > > command completed in 1 sec > > > running: "C:/Inetpub/tpp-bin/ASAPRatioPeptideParser "Z11.pep.xml" -lRK > > -F -r0.2 -mR166.11K134.11" > > WARNING: Found more than one variable mod on 'K'. Please make sure to > > specify a heavy mass for this residue. > > WARNING: Found more than one variable mod on 'R'. Please make sure to > > specify a heavy mass for this residue. > > command completed in 1 sec > > > running: "C:/Inetpub/tpp-bin/DatabaseParser "Z11.pep.xml"" > > command completed in 0 sec > > > running: "C:/Inetpub/tpp-bin/RefreshParser "Z11.pep.xml" "G:/Daten/ESI/ > > data/dbase/IPI/current/ipi.HUMAN.v3.62.fasta"" > > - Searching the tree... > > - Linking duplicate entries... - Printing results... > > > - Building Commentz-Walter keyword tree...command completed in 4 > > sec > > > running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I g:/Daten/ > > ESI/JZ/J090716/Z11.D/Z11.pep.xml" > > > =============================== --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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