In tpp_gui.pl, the line where the sections get changed depending on
which pipeline you choose are off by one:
if ($pipeline eq 'Mascot') {
$sections[2] = { name => 'Analysis Pipeline', pages=>
'mzxml,msconvert,runmascot,topepxml,xinteract,iprophet,runprophet'};
} elsif ($pipeline eq 'SpectraST') {
$sections[2] = { name => 'Analysis Pipeline', pages=>
'mzxml,msconvert,runspectrast,xinteract,iprophet,runprophet'};
} elsif ($pipeline eq 'Tandem') {
$sections[2] = { name => 'Analysis Pipeline', pages=>
'mzxml,msconvert,runtandem,topepxml,xinteract,iprophet,runprophet'};
}
They should read:
if ($pipeline eq 'Mascot') {
$sections[3] = { name => 'Analysis Pipeline', pages=>
'mzxml,msconvert,runmascot,topepxml,xinteract,iprophet,runprophet'};
} elsif ($pipeline eq 'SpectraST') {
$sections[3] = { name => 'Analysis Pipeline', pages=>
'mzxml,msconvert,runspectrast,xinteract,iprophet,runprophet'};
} elsif ($pipeline eq 'Tandem') {
$sections[3] = { name => 'Analysis Pipeline', pages=>
'mzxml,msconvert,runtandem,topepxml,xinteract,iprophet,runprophet'};
}
Cheers,
David
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