Hi David,
Thanks for the report and fix!  This has already been fixed in the code, and
should be out with the next release of the TPP.  In the meantime, everyone
should feel free to make this change to their local file (4.3.0 version
only).
--Luis

ps> This was also related to a previous post:
http://groups.google.com/group/spctools-discuss/browse_thread/thread/e13abe6ee7cd0570/317476ef696ed4f2?lnk=gst&q=#317476ef696ed4f2




On Thu, Aug 20, 2009 at 12:01 AM, David Schibeci <[email protected]>wrote:

>
> In tpp_gui.pl, the line where the sections get changed depending on
> which pipeline you choose are off by one:
>
>        if ($pipeline eq 'Mascot') {
>            $sections[2] = { name => 'Analysis Pipeline', pages=>
> 'mzxml,msconvert,runmascot,topepxml,xinteract,iprophet,runprophet'};
>        } elsif ($pipeline eq 'SpectraST') {
>            $sections[2] = { name => 'Analysis Pipeline', pages=>
> 'mzxml,msconvert,runspectrast,xinteract,iprophet,runprophet'};
>        } elsif ($pipeline eq 'Tandem') {
>            $sections[2] = { name => 'Analysis Pipeline', pages=>
> 'mzxml,msconvert,runtandem,topepxml,xinteract,iprophet,runprophet'};
>        }
>
> They should read:
>
>        if ($pipeline eq 'Mascot') {
>            $sections[3] = { name => 'Analysis Pipeline', pages=>
> 'mzxml,msconvert,runmascot,topepxml,xinteract,iprophet,runprophet'};
>        } elsif ($pipeline eq 'SpectraST') {
>            $sections[3] = { name => 'Analysis Pipeline', pages=>
> 'mzxml,msconvert,runspectrast,xinteract,iprophet,runprophet'};
>        } elsif ($pipeline eq 'Tandem') {
>            $sections[3] = { name => 'Analysis Pipeline', pages=>
> 'mzxml,msconvert,runtandem,topepxml,xinteract,iprophet,runprophet'};
>        }
>
> Cheers,
> David
>
> >
>

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