Hi Joe,

well spotted - I had not even included the offending file in my
posting!

I changed the Makefile.config.incl and repeated the build - files
appear to be now where the webserver configuration file in the
installation script claims the should be.

However, I am still unable to access the local tpp start page on

http://linux01/tpp/cgi-bin/tpp_gui.pl (linux01 is the hostname) or
http://localhost/tpp/cgi-bin/tpp_gui.pl

The webserver is running (I have our local Mascot sitting on the same
computer and it is working just fine).

-------------------error message:---------------------
The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this
server.
Apache/2.2.11 (Ubuntu) PHP/5.2.6-3ubuntu4.2 with Suhosin-Patch Server
at linux01 Port 80
--------------------------------------------------------------

Thanks a million again for the help,
Achim

On Aug 25, 6:32 pm, Joe Slagel <[email protected]> wrote:
> Hi Achim,
>
> I've run into something like this a couple of times before.  What I've found
> is that when you set the location in your
> Makefile.config.incl(Makefile.config) its important to have a trailing "/"
> on the TPP_ROOT and TPP_WEB variables..
>
> -Joe
>
>
>
> On Tue, Aug 25, 2009 at 3:56 AM, achimt <[email protected]> wrote:
>
> > Dear all,
>
> > I am in the process of trying to install TPP 4.3.0 on ubuntu 9.04.
> > THanks to the help of Natalie and Joe, I managed to compile everything
> > correctly (I think :-). However, when I am setting ub things, I come
> > across the following stumbling block:
>
> > In the installation script it says (in the section about configuring
> > apache):
>
> > ---------------------- from 'install-ubuntu-9_04.sh'
> > ---------------------------
> >        # directory to store data for web browser viewing
> >        ScriptAlias /tpp/data "/usr/local/apps/tpp/data"
> >        <Directory "/usr/local/apps/tpp/data">
> >                AllowOverride None
> >                Options Indexes FollowSymLinks Includes
> >                Order allow,deny
> >                Allow from all
> >        </Directory>
>
> >        # directory for tpp's html resources (css, js, images, etc)
> >        ScriptAlias /tpp/html "/usr/local/apps/tpp/html"
> >        <Directory "/usr/local/apps/tpp/html">
> >                AllowOverride None
> >                Options Includes Indexes FollowSymLinks MultiViews
> >                Order allow,deny
> >                Allow from all
> >        </Directory>
>
> >        # directory for tpp's schema resources
> >        <Directory "/usr/local/apps/tpp/schema">
> >                AllowOverride None
> >                Options Includes Indexes FollowSymLinks MultiViews
> >                Order allow,deny
> >                Allow from all
> >        </Directory>
>
> >        # directory for tpp's executable files
> >        ScriptAlias /tpp/cgi-bin "/usr/local/apps/tpp/cgi-bin"
> >        <Directory "/usr/local/apps/tpp/cgi-bin">
> >                #AllowOverride AuthConfig Limit
> >                AllowOverride All
> >                Options Indexes FollowSymLinks MultiViews ExecCGI
> > +Includes
> >                AddHandler default-handler .jpg .png .css .ico .gif
> >                AddHandler cgi-script .cgi .pl
> >                Order allow,deny
> >                Allow from all
> >                SetEnv WEBSERVER_ROOT /usr/local/apps
> >                #SetEnv WEBSERVER_ROOT /var/www
> >        </Directory>
> > ------------------------ end -------------------------------------
>
> > However, when I look at /usr/local/apps, I see the following
> > directories:
>
> > ------------------------ terminal output --------------------------
> > ac...@linux01:/usr/local/apps$ ll
> > total 24
> > drwxr-xr-x 2 root root 4096 2009-08-24 11:13 tpp
> > drwxr-xr-x 2 root root 4096 2009-08-24 11:13 tppbin
> > drwxr-xr-x 4 root root 4096 2009-08-24 11:13 tppcgi-bin
> > drwxr-xr-x 2 root root 4096 2009-08-24 11:13 tppetc
> > drwxr-xr-x 5 root root 4096 2009-08-24 11:13 tpphtml
> > drwxr-xr-x 2 root root 4096 2009-08-24 11:13 tppschema
> > ------------------------ end terminal output -------------------
>
> > Does this indicate that I have done something wrong during the
> > installation process or that the file structure might have changed
> > slightly, without this being reflected in the installation script?
>
> > Your help is very much appreciated,
>
> > Achim
>
> --
> Joe Slagel
> Institute for Systems Biology
> [email protected]
> (206) 732-1362

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