Hi Joe,
thanks a lot for the reply. I am posting the apache configuration file
below (I am embarassed to admit that I would not even know what
virtual hosts are...)
Best wishes,
Achim
---------------------- apache2 configuration file -------------------
ac...@linux01:/etc/apache2/sites-enabled$ cat 000-default
# NameVirtualHost *
<VirtualHost *:80>
ServerAdmin webmas...@localhost
DocumentRoot /var/www
SetEnv WEBSERVER_ROOT /var/www
# Access logs
<IfModule log_config_module>
# Directives defining formatting of access log output
LogFormat "%h %l %u %t \"%r\" %>s %b \"%{Referer}i\"
\"%{User-Agent}i
\"" combined
LogFormat "%h %l %u %t \"%r\" %>s %b" common
<IfModule logio_module>
# You need to enable mod_logio.c to use %I and %O
LogFormat "%h %l %u %t \"%r\" %>s %b \"%{Referer}i\"
\"%{User-Agent}
i\" %I %O" combinedio
</IfModule>
CustomLog /var/log/tpp/tpp_access_log common
</IfModule>
<Directory />
Options FollowSymLinks
AllowOverride None
</Directory>
<Directory /var/www/>
Options Indexes FollowSymLinks MultiViews
AllowOverride All
Order allow,deny
allow from all
</Directory>
ScriptAlias /cgi-bin/ /usr/lib/cgi-bin/
<Directory "/usr/lib/cgi-bin">
AllowOverride None
Options +ExecCGI -MultiViews +SymLinksIfOwnerMatch
Order allow,deny
Allow from all
</Directory>
ErrorLog /var/log/apache2/error.log
# Possible values include: debug, info, notice, warn, error, crit,
# alert, emerg.
LogLevel warn
CustomLog /var/log/apache2/access.log combined
ServerSignature On
Alias /doc/ "/usr/share/doc/"
<Directory "/usr/share/doc/">
Options Indexes MultiViews FollowSymLinks
AllowOverride None
Order deny,allow
Deny from all
Allow from 127.0.0.0/255.0.0.0 ::1/128
</Directory>
# directory to store data for web browser viewing
ScriptAlias /tpp/data/ "/usr/local/apps/tpp/data/"
<Directory "/usr/local/apps/tpp/data/">
AllowOverride None
Options Includes Indexes FollowSymLinks MultiViews
Order allow,deny
Allow from all
</Directory>
# directory for tpp's html resources (css, js, images etc)
ScriptAlias /tpp/html/ "/usr/local/apps/tpp/html/"
<Directory "/usr/local/apps/tpp/html/">
AllowOverride None
Options Includes Indexes FollowSymLinks MultiViews
Order allow,deny
Allow from all
</Directory>
# directory for tpp's schema resources
<Directory "/usr/local/apps/tpp/schema/">
AllowOverride None
Options Includes Indexes FollowSymLinks MultiViews
Order allow,deny
Allow from all
</Directory>
# directory for tpp's executable files
ScriptAlias /tpp/cgi-bin/ "usr/local/apps/tpp/cgi-bin/"
<Directory "/usr/local/apps/tpp/cgi-bin/">
#AllowOverride AuthConfig Limit
AllowOverride All
Options Indexes FollowSymLinks MultiViews ExecCGI +Includes
AddHandler default-handler .jpg .png .css .ico .gif
AddHandler cgi-script .cgi .pl
Order allow,deny
Allow from all
SetEnv WEBSERVER_ROOT /usr/local/apps
#SetEnv WEBSERVER_ROOT /var/www
</Directory>
<Directory "/usr/local/mascot/cgi/">
AllowOverride None
Options None
Order allow,deny
Allow from all
</Directory>
ScriptAlias /mascot/cgi/ /usr/local/mascot/cgi/
<Directory "/usr/local/mascot/x-cgi/">
AllowOverride None
Options None
Order allow,deny
Allow from all
</Directory>
ScriptAlias /mascot/x-cgi/ /usr/local/mascot/x-cgi/
<Directory "/usr/local/mascot/html/">
AllowOverride None
Options None
Order allow,deny
Allow from all
</Directory>
Alias /mascot/ /usr/local/mascot/html/
<Directory "/var/www/thegpm/tandem/">
Options Indexes MultiViews
AllowOverride None
Order allow,deny
Allow from all
</Directory>
Alias /tandem/ "/var/www/thegpm/tandem/"
<Directory "/var/www/thegpm/cache/">
Options Indexes MultiViews
AllowOverride None
Order allow,deny
Allow from all
</Directory>
Alias /cache/ "/var/www/thegpm/cache/"
<Directory "/var/www/thegpm/gpm/">
Options Indexes MultiViews
AllowOverride None
Order allow,deny
Allow from all
</Directory>
Alias /gpm/ "/var/www/thegpm/gpm/"
<Directory "/var/www/thegpm/pics/">
Options Indexes MultiViews
AllowOverride None
Order allow,deny
Allow from all
</Directory>
Alias /pics/ "/var/www/thegpm/pics/"
<Directory "/var/www/thegpm/thegpm-cgi">
AllowOverride None
Options None
Order allow,deny
Allow from all
</Directory>
ScriptAlias /thegpm-cgi/ "/var/www/thegpm/thegpm-cgi/"
</VirtualHost>
----------------------------- end apache2 configuration file
-------------------------
On Sep 1, 10:46 pm, Joe Slagel <[email protected]> wrote:
> Achim,
>
> Sounds like there is something off in your Apache configuration file. Do
> you know if you have setup named based virtual hosts? If you could post your
> apach2.conf file it may help.
>
> -Joe
>
>
>
> On Sat, Aug 29, 2009 at 9:46 AM, achimt <[email protected]> wrote:
>
> > When I restart apache, I receive the following warning:
>
> > ---------------------------------------------
> > * Restarting web server
> > apache2 [Sat Aug
> > 29 17:41:44 2009] [error] VirtualHost *:80 -- mixing * ports and non-*
> > ports with a NameVirtualHost address is not supported, proceeding with
> > undefined results
> > [Sat Aug 29 17:41:44 2009] [warn] NameVirtualHost *:80 has no
> > VirtualHosts
> > ... waiting [Sat Aug 29 17:41:45 2009] [error] VirtualHost *:80 --
> > mixing * ports and non-* ports with a NameVirtualHost address is not
> > supported, proceeding with undefined results
> > [Sat Aug 29 17:41:45 2009] [warn] NameVirtualHost *:80 has no
> > VirtualHosts
>
> > [ OK ]
> > ---------------------------------------------
> > Does this point me towards where I am going wrong?
> > Regards,
> > Achim
>
> > On Aug 25, 10:39 pm, Joe Slagel <[email protected]> wrote:
> > > Achim,
>
> > > Did you restart Apache after making your changes to the conf files? If
> > yes
> > > I'd then look at the Apache access and error log files to see what
> > messages
> > > are there.
>
> > > -Joe
>
> > > On Tue, Aug 25, 2009 at 1:39 PM, achimt <[email protected]>
> > wrote:
>
> > > > Hi Joe,
>
> > > > well spotted - I had not even included the offending file in my
> > > > posting!
>
> > > > I changed the Makefile.config.incl and repeated the build - files
> > > > appear to be now where the webserver configuration file in the
> > > > installation script claims the should be.
>
> > > > However, I am still unable to access the local tpp start page on
>
> > > >http://linux01/tpp/cgi-bin/tpp_gui.pl(linux01<http://linux01/tpp/cgi-bin/tpp_gui.pl%28linux01>is
> > > > the hostname) or
> > > >http://localhost/tpp/cgi-bin/tpp_gui.pl
>
> > > > The webserver is running (I have our local Mascot sitting on the same
> > > > computer and it is working just fine).
>
> > > > -------------------error message:---------------------
> > > > The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this
> > > > server.
> > > > Apache/2.2.11 (Ubuntu) PHP/5.2.6-3ubuntu4.2 with Suhosin-Patch Server
> > > > at linux01 Port 80
> > > > --------------------------------------------------------------
>
> > > > Thanks a million again for the help,
> > > > Achim
>
> > > > On Aug 25, 6:32 pm, Joe Slagel <[email protected]> wrote:
> > > > > Hi Achim,
>
> > > > > I've run into something like this a couple of times before. What
> > I've
> > > > found
> > > > > is that when you set the location in your
> > > > > Makefile.config.incl(Makefile.config) its important to have a
> > trailing
> > > > "/"
> > > > > on the TPP_ROOT and TPP_WEB variables..
>
> > > > > -Joe
>
> > > > > On Tue, Aug 25, 2009 at 3:56 AM, achimt <[email protected]>
> > > > wrote:
>
> > > > > > Dear all,
>
> > > > > > I am in the process of trying to install TPP 4.3.0 on ubuntu 9.04.
> > > > > > THanks to the help of Natalie and Joe, I managed to compile
> > everything
> > > > > > correctly (I think :-). However, when I am setting ub things, I
> > come
> > > > > > across the following stumbling block:
>
> > > > > > In the installation script it says (in the section about
> > configuring
> > > > > > apache):
>
> > > > > > ---------------------- from 'install-ubuntu-9_04.sh'
> > > > > > ---------------------------
> > > > > > # directory to store data for web browser viewing
> > > > > > ScriptAlias /tpp/data "/usr/local/apps/tpp/data"
> > > > > > <Directory "/usr/local/apps/tpp/data">
> > > > > > AllowOverride None
> > > > > > Options Indexes FollowSymLinks Includes
> > > > > > Order allow,deny
> > > > > > Allow from all
> > > > > > </Directory>
>
> > > > > > # directory for tpp's html resources (css, js, images, etc)
> > > > > > ScriptAlias /tpp/html "/usr/local/apps/tpp/html"
> > > > > > <Directory "/usr/local/apps/tpp/html">
> > > > > > AllowOverride None
> > > > > > Options Includes Indexes FollowSymLinks MultiViews
> > > > > > Order allow,deny
> > > > > > Allow from all
> > > > > > </Directory>
>
> > > > > > # directory for tpp's schema resources
> > > > > > <Directory "/usr/local/apps/tpp/schema">
> > > > > > AllowOverride None
> > > > > > Options Includes Indexes FollowSymLinks MultiViews
> > > > > > Order allow,deny
> > > > > > Allow from all
> > > > > > </Directory>
>
> > > > > > # directory for tpp's executable files
> > > > > > ScriptAlias /tpp/cgi-bin "/usr/local/apps/tpp/cgi-bin"
> > > > > > <Directory "/usr/local/apps/tpp/cgi-bin">
> > > > > > #AllowOverride AuthConfig Limit
> > > > > > AllowOverride All
> > > > > > Options Indexes FollowSymLinks MultiViews ExecCGI
> > > > > > +Includes
> > > > > > AddHandler default-handler .jpg .png .css .ico .gif
> > > > > > AddHandler cgi-script .cgi .pl
> > > > > > Order allow,deny
> > > > > > Allow from all
> > > > > > SetEnv WEBSERVER_ROOT /usr/local/apps
> > > > > > #SetEnv WEBSERVER_ROOT /var/www
> > > > > > </Directory>
> > > > > > ------------------------ end -------------------------------------
>
> > > > > > However, when I look at /usr/local/apps, I see the following
> > > > > > directories:
>
> > > > > > ------------------------ terminal output --------------------------
> > > > > > ac...@linux01:/usr/local/apps$ ll
> > > > > > total 24
> > > > > > drwxr-xr-x 2 root root 4096 2009-08-24 11:13 tpp
> > > > > > drwxr-xr-x 2 root root 4096 2009-08-24 11:13 tppbin
> > > > > > drwxr-xr-x 4 root root 4096 2009-08-24 11:13 tppcgi-bin
> > > > > > drwxr-xr-x 2 root root 4096 2009-08-24 11:13 tppetc
> > > > > > drwxr-xr-x 5 root root 4096 2009-08-24 11:13 tpphtml
> > > > > > drwxr-xr-x 2 root root 4096 2009-08-24 11:13 tppschema
> > > > > > ------------------------ end terminal output -------------------
>
> > > > > > Does this indicate that I have done something wrong during the
> > > > > > installation process or that the file structure might have changed
> > > > > > slightly, without this being reflected in the installation script?
>
> > > > > > Your help is very much appreciated,
>
> > > > > > Achim
>
> > > > > --
> > > > > Joe Slagel
> > > > > Institute for Systems Biology
> > > > > [email protected]
> > > > > (206) 732-1362
>
> > > --
> > > Joe Slagel
> > > Institute for Systems Biology
> > > [email protected]
> > > (206) 732-1362
>
> --
> Joe Slagel
> Institute for Systems Biology
> [email protected]
> (206) 732-1362
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