Dear all: May I check one question? I am doing SILAC analysis with LCQ OR LTQ. After I load the data to run the peptide analysis in TPP, I select the running protein probability, asap xpress ratio. I am wondering whether the software kicks out all the duplicated peptides (the peptide come from two different proteins) when they calculated ASAP OR XPRESS RATIO.
By the way, I assume that asap or xpress ratio is always light/heavy, right? Compared asap and xpress ratio, which one is more reliable? How to evaluate the ASAP OR XPRESS results? Thank you for your kind help Eileen --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
