Hello. I'm trying out iProphet on some data I have but I'm not using the Petunia interface. The data I have consists of the same experiment searched with X!TANDEM and MASCOT.
I'm doing all this from the command line and so I've already prepared the search results via Tandem2XML and Mascot2XML. Now I run xinteract as follows: xinteract -Od -ip -drev -Niproph *.XML Things seem to go fine but then I get this error message: ======================= ... loading files.... file 74: UM_2010_0747.XML file 75: UM_2010_0748.XML processed altogether 788948 results results written to file /data/users/dfermin/iProphet/interact- iproph.pep.shtml command completed in 181 sec running: "/usr/local/apps/dev.tpp/bin/PeptideProphetParser 'interact- iproph.pep.xml' DECOYPROBS DECOY=rev" Using Decoy Label "rev". Decoy Probabilities will be reported. (MASCOT) error: -1.0 ion score command "/usr/local/apps/dev.tpp/bin/PeptideProphetParser 'interact- iproph.pep.xml' DECOYPROBS DECOY=rev" exited with non-zero exit code: 256 QUIT - the job is incomplete ======================= xinteract works fine on just the XTANDEM results or just the MASCOT results but it gives this error whenever I try to "merge" the results. Has any one got a suggestion of what is going wrong? Thanks in advance for any and all help. Damian --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
