Hi
I have been analyzing iTRAQ data with TPP mostly without any hiccups.
I rely on peptide prophet to set a FDR so I  open the results for
peptide prophet from pepxml viewer. i can do this without any problem
the session I do all analysis starting from .OUT files. However when I
log on to TPP after a few days and try to open Peptide prophet
results , it gives me a white page. This is the location of the file
it is trying to open;

http://localhost/tpp-bin/ModelParser.cgi?Xmlfile=c:/Inetpub/wwwroot/ISB/data/24hrBLOOD_MILD_noreverse/24hr_BLOOD_MILD_G1_10ACN.pep.xml&Timestamp=2009-06-29T15:37:46&Spectrum=0601009plasmaG1_10ACN.1002.1002.2&Scores=fval:3.3334%20ntt:2%20nmc:0%20massd:0.003&Prob=0.9800

It does not give me any error message. The only way I deal with this
problem is to run the whole analysis again, which is very time
consuming.
thank you very much for your help in advance.
Gogce

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