All, I've previously had problems getting iProphet .prot.xml to display correctly when using xsltproc on Fedora Core 8 as the xslt processor. Everything worked with Xalan but not xsltproc, and error messages where confusing. I've now had a chance to debug the xsl, and the issue is that an xsl:param tag is incorrectly positioned - it is not the first entry in its xsl:template tag. Xalan was coping with this, but xsltproc does not like it. The following change to protxml2html.pl fixes this problem:
Move protxml2html.pl line 4727 above line 4726, e.g. print XSL '<xsl:template match="protx:indistinguishable_peptide">'; print XSL '<xsl:variable name="PepMass"><xsl:if test="@calc_neutral_pep_mass"><xsl:value-of select="@calc_neutral_pep_mass"/></xsl:if></xsl:variable>'; print XSL '<xsl:param name="mypep"/>'; becomes: print XSL '<xsl:template match="protx:indistinguishable_peptide">'; print XSL '<xsl:param name="mypep"/>'; print XSL '<xsl:variable name="PepMass"><xsl:if test="@calc_neutral_pep_mass"><xsl:value-of select="@calc_neutral_pep_mass"/></xsl:if></xsl:variable>'; This was easy to find by running everything through saxon-xslt, an alternative processor which tends to give vastly more helpful and specific error messages than xsltproc. Cheers, DT --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
