Hello All, I'm using the latest stable release of TPP (4.3.1) to search some phospho ETD data. I've modified my tandem input file for ETD: scoring, x ions: no scoring, y ions: no scoring, z ions: yes scoring, a ions: no scoring, b ions: no scoring, c ions: yes
residue, potential modification mass: 15.994...@m,5...@c residue, potential modification motif: 79...@[sty] Keeping all of the other parameters fixed. X!Tandem seems to run fine and so does xinteract. However, when I look at the number of matched ions for any given spectrum, this field always reports zero. Is anyone else seeing this? Is this a bug or have I forgotten some critical flag for analyzing ETD data? I'm running TPP v.4.3.1 on RHEL 5.2 (64-bit). The command I execute at the terminal is: xinteract -Opd -drev output.XML Any and all advice is welcomed. Thanks --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
