Try a later release of pwiz. I know that's the one that the web page 
points to as the default, we're working on a way to improve that.


Silvia Rocchiccioli wrote:
> Hi Matt,
> thank you.
> I have tried to use ProteoWizard......., I can create the mzXML file 
> starting from mzML but when I try to open it with "seems.exe" a warning 
> message appears......
> You find it attached.
> Silvia
>
>
>
>
> Matthew Chambers wrote:
>   
>> Hi Silvia,
>>
>> It's easy to convert from mzML to mzXML with msconvert: 
>> http://proteowizard.sourceforge.net/technical/formats/index.html
>>
>> http://proteowizard.sourceforge.net/download.html
>>
>> -Matt
>>
>>
>> Silvia wrote:
>>   
>>     
>>> I have an Applied Biosystems 4800 MALDI TOF TOF and I use an LC-MALDI
>>> workflow. Applied Biosystems gave me a tool to convert all T2D files
>>> from an LC-run in a mzML file. For every run I have one mzML
>>> containing MS and MSMS information. The question is: Can I go back
>>> from mzML to mzXML? The majority of software up to today uses mzXML
>>> and not mzML format. If I try to convert directly from T2D to mzXML I
>>> am not able to obtain all T2D files in only one mzXML, but I obtain
>>> for every T2D one mzXML (for example with "convertpeaklist")
>>> Thank you

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