Yes it appears to be something unexpected with your mzML. I tested it myself just now with 1386 from Thermo RAW -> mzML -> mzXML and it worked. Where'd the mzML come from? Let's move this to the pwiz-support list.
-Matt Silvia Rocchiccioli wrote: > Hi, > I tried the latest version: > pwiz-bin-windows-x86-vc90-1_6_1386.............but the error message is > the same: > --------------------------- > Unhandled Exception > --------------------------- > System.Exception: > [Serializer_mzXML::translate_parentFileExtensionToSourceFileType] > unknown file extension for parentFile "LC Anionica cationica VSMC 80C > 10Ottobre08" > in pwiz.CLI.msdata.MSDataFile..ctor(String path) > in seems.OpenDataSourceDialog.listView_ItemSelectionChanged(Object > sender, ListViewItemSelectionChangedEventArgs e) > in > System.Windows.Forms.ListView.OnItemSelectionChanged(ListViewItemSelectionChangedEventArgs > > e) > in System.Windows.Forms.ListView.WmReflectNotify(Message& m) > in System.Windows.Forms.ListView.WndProc(Message& m) > in > System.Windows.Forms.Control.ControlNativeWindow.OnMessage(Message& m) > in System.Windows.Forms.Control.ControlNativeWindow.WndProc(Message& m) > in System.Windows.Forms.NativeWindow.Callback(IntPtr hWnd, Int32 msg, > IntPtr wparam, IntPtr lparam) > --------------------------- > OK > --------------------------- > > Could the problem be related to our mzML?.....but when I try to open it > with seems.exe it works correctly. > Silvia > > > > > > > Matt Chambers wrote: > >> Try a later release of pwiz. I know that's the one that the web page >> points to as the default, we're working on a way to improve that. >> >> >> Silvia Rocchiccioli wrote: >> >> >>> Hi Matt, >>> thank you. >>> I have tried to use ProteoWizard......., I can create the mzXML file >>> starting from mzML but when I try to open it with "seems.exe" a warning >>> message appears...... >>> You find it attached. >>> Silvia >>> >>> >>> >>> >>> Matthew Chambers wrote: >>> >>> >>> >>>> Hi Silvia, >>>> >>>> It's easy to convert from mzML to mzXML with msconvert: >>>> http://proteowizard.sourceforge.net/technical/formats/index.html >>>> >>>> http://proteowizard.sourceforge.net/download.html >>>> >>>> -Matt >>>> >>>> >>>> Silvia wrote: >>>> >>>> >>>> >>>> >>>>> I have an Applied Biosystems 4800 MALDI TOF TOF and I use an LC-MALDI >>>>> workflow. Applied Biosystems gave me a tool to convert all T2D files >>>>> from an LC-run in a mzML file. For every run I have one mzML >>>>> containing MS and MSMS information. The question is: Can I go back >>>>> from mzML to mzXML? The majority of software up to today uses mzXML >>>>> and not mzML format. If I try to convert directly from T2D to mzXML I >>>>> am not able to obtain all T2D files in only one mzXML, but I obtain >>>>> for every T2D one mzXML (for example with "convertpeaklist") >>>>> Thank you >>>>> >>>>> >> >> > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
