No worries, a corrected Mascot2XML will be in the next TPP release.

Brian

On Wed, Nov 11, 2009 at 3:21 PM, Simon Michnowicz <
[email protected]> wrote:

>
>
> Unfortunately we have no control over what goes in the FASTA
> databases! Matrix Science's pepXML generation code escapes the XML
> if ($thisScript->param($urlParams{'prot_desc'})) {
>            $prot_desc = &noXmlTag(&mustGetProteinDescription
> ($protein_list[0], \%fastaTitles));
>          }
> Where noXMLTag() detags strings of xml tags..
>
> Thanks
> Simon Michnowicz.
>
> >
>

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