MzXML2Search conversion to mgf fails for me on mzXML / mzML created using msconvert from Agilent 6520 QTOF data.
Trapper numbers spectra using an index starting at 1, whilst msconvert uses the Agilent scan ID (can be a very large number). MzXML2Search conversion of the resulting file into mgf then fails once it reaches a scan ID > 99,999. Have seen similar problems with other programs and contacted Matt Chambers who said that the numbering would stay the same, and that it's better if programs which can't cope with the large numbers are fixed. Is this possible (desirable?) for MzXML2Search and any other TPP tools that might be affected? I can't use Trapper as I need to extract Profile MS + Centroid MS/MS from a dual mode file (msconvert supported). I can't directly convert to mgf with msconvert as I need to do peak thresholding to get file sizes down to a reasonable level. Cheers, DT --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
