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• 2022/04/22 Re: [spctools-discuss] TPP 6.1.0 rc9 Missing module in Perl installation 'David Shteynberg' via spctools-discuss
• 2022/04/22 [spctools-discuss] TPP 6.1.0 rc9 Missing module in Perl installation Juergen Bartel
• 2022/04/09 Re: [spctools-discuss] Error in converting .raw file to .mzml file Jingyi Hu
• 2022/04/06 RE: [spctools-discuss] Error 256 Convert raw to mzML 'Eric Deutsch' via spctools-discuss
• 2022/04/06 RE: [spctools-discuss] Error in converting .raw file to .mzml file 'Eric Deutsch' via spctools-discuss
• 2022/04/06 Re: [spctools-discuss] Libra on MS3-based TMT quantification 'David Shteynberg' via spctools-discuss
• 2022/04/06 Re: [spctools-discuss] Libra on MS3-based TMT quantification Shagun Gupta
• 2022/04/05 Re: [spctools-discuss] Libra on MS3-based TMT quantification 'David Shteynberg' via spctools-discuss
• 2022/04/04 Re: [spctools-discuss] Tandem2XML all-15N issue 'David Shteynberg' via spctools-discuss
• 2022/04/01 Re: [spctools-discuss] Libra on MS3-based TMT quantification Shagun Gupta
• 2022/04/01 [spctools-discuss] Error in converting .raw file to .mzml file Jingyi Hu
• 2022/04/01 Re: [spctools-discuss] Libra on MS3-based TMT quantification Shagun Gupta
• 2022/04/01 [spctools-discuss] Error 256 Convert raw to mzML Jingyi Hu
• 2022/03/27 Re: [spctools-discuss] Libra on MS3-based TMT quantification 'David Shteynberg' via spctools-discuss
• 2022/03/26 Re: [spctools-discuss] Libra on MS3-based TMT quantification Shagun Gupta
• 2022/03/25 Re: [spctools-discuss] Libra on MS3-based TMT quantification Shagun Gupta
• 2022/03/25 Re: [spctools-discuss] Libra on MS3-based TMT quantification 'David Shteynberg' via spctools-discuss
• 2022/03/25 Re: [spctools-discuss] Libra on MS3-based TMT quantification 'David Shteynberg' via spctools-discuss
• 2022/03/25 Re: [spctools-discuss] Libra on MS3-based TMT quantification 'David Shteynberg' via spctools-discuss
• 2022/03/25 Re: [spctools-discuss] Libra on MS3-based TMT quantification Shagun Gupta
• 2022/03/25 Re: [spctools-discuss] Libra on MS3-based TMT quantification 'David Shteynberg' via spctools-discuss
• 2022/03/25 [spctools-discuss] Libra on MS3-based TMT quantification Shagun Gupta
• 2022/03/17 Re: [spctools-discuss] MzXML2Search does not create files 'Luis Mendoza' via spctools-discuss
• 2022/03/17 Re: [spctools-discuss] MzXML2Search does not create files 'Luis Mendoza' via spctools-discuss
• 2022/03/10 [spctools-discuss] Re: Tandem2XML Unsupported search enzyme Farshad Abdollah-Nia
• 2022/03/10 [spctools-discuss] The common modification list recognized by SpectraST Zhongzhi
• 2022/03/09 Re: [spctools-discuss] Tandem2XML all-15N issue Farshad AbdollahNia
• 2022/03/02 [spctools-discuss] MzXML2Search does not create files Maxence Le Vasseur
• 2022/02/26 [spctools-discuss] Could Libra give me a protein quantification matrix? JWang Lu
• 2022/02/24 Re: [spctools-discuss] Tandem2XML all-15N issue 'David Shteynberg' via spctools-discuss
• 2022/01/30 [spctools-discuss] Tandem2XML all-15N issue Farshad Abdollah-Nia
• 2021/12/16 Re: [spctools-discuss] Re: TPP Comet search time-out 'David Shteynberg' via spctools-discuss
• 2021/12/16 Re: [spctools-discuss] Re: TPP Comet search time-out Fahad Saeed
• 2021/12/16 [spctools-discuss] Re: TPP Comet search time-out Will Comstock
• 2021/12/09 [spctools-discuss] SpectraST [email protected]
• 2021/12/06 Re: [spctools-discuss] Set number of cores/threads/RAM in SpectraST? Philip Gerth
• 2021/12/03 RE: [spctools-discuss] Set number of cores/threads/RAM in SpectraST? Eric Deutsch
• 2021/12/02 [spctools-discuss] Set number of cores/threads/RAM in SpectraST? Philip Gerth
• 2021/12/02 [spctools-discuss] Setting number of cores/threads/RAM for SpectraST Philip Gerth
• 2021/11/11 [spctools-discuss] Tandem2XML Unsupported search enzyme besn efthy
• 2021/11/10 [spctools-discuss] Re: QualScore - 0 dtas written Yun-En Chung
• 2021/11/09 [spctools-discuss] TPP Comet search time-out Steven He
• 2021/11/05 Re: [spctools-discuss] TPP offline version? 'Luis Mendoza' via spctools-discuss
• 2021/11/05 [spctools-discuss] TPP offline version? [email protected]
• 2021/11/01 Re: [spctools-discuss] PTMProphet flags 'David Shteynberg' via spctools-discuss
• 2021/10/18 [spctools-discuss] PTMProphet flags Pedro Cardoso
• 2021/09/27 [spctools-discuss] MSconvert stopped working Tim Fugmann
• 2021/09/19 Re: [spctools-discuss] Re: Max input file size limit for comet search? Steven He
• 2021/09/17 RE: [spctools-discuss] Re: Max input file size limit for comet search? Eric Deutsch
• 2021/09/17 [spctools-discuss] Re: Max input file size limit for comet search? Jason Winget
• 2021/09/16 Re: [spctools-discuss] Precursor Intensity after Comet search Will Comstock
• 2021/09/16 Re: [spctools-discuss] Precursor Intensity after Comet search 'David Shteynberg' via spctools-discuss
• 2021/09/16 [spctools-discuss] Precursor Intensity after Comet search Will Comstock
• 2021/09/05 Re: [spctools-discuss] TPP 6.0 Libra Error 'David Shteynberg' via spctools-discuss
• 2021/09/04 Re: [spctools-discuss] TPP 6.0 Libra Error Will Comstock
• 2021/09/03 Re: [spctools-discuss] TPP 6.0 Libra Error 'David Shteynberg' via spctools-discuss
• 2021/09/03 Re: [spctools-discuss] TPP 6.0 Libra Error 'David Shteynberg' via spctools-discuss
• 2021/09/03 Re: [spctools-discuss] TPP 6.0 Libra Error Will Comstock
• 2021/09/03 Re: [spctools-discuss] TPP 6.0 Libra Error 'David Shteynberg' via spctools-discuss
• 2021/09/03 [spctools-discuss] TPP 6.0 Libra Error Will Comstock
• 2021/08/24 Re: [spctools-discuss] Cannot execute 'tpp_models.pl' by 'ProphetModels.pl' in TPP_5.2.0 'Luis Mendoza' via spctools-discuss
• 2021/08/23 [spctools-discuss] Cannot execute 'tpp_models.pl' by 'ProphetModels.pl' in TPP_5.2.0 Huang xiaoxiang
• 2021/08/18 Re: [spctools-discuss] PTMProphet and best localization score 'David Shteynberg' via spctools-discuss
• 2021/08/18 [spctools-discuss] PTMProphet and best localization score Niko Pinter
• 2021/08/11 [spctools-discuss] TPP 6.0.0 Release is now available 'Luis Mendoza' via spctools-discuss
• 2021/06/30 Re: [spctools-discuss] DIALib-QC 'Charu Midha' via spctools-discuss
• 2021/06/30 [spctools-discuss] DIALib-QC Candice Lavelle
• 2021/06/24 Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Alastair Skeffington' via spctools-discuss
• 2021/06/22 RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Michael Hoopmann' via spctools-discuss
• 2021/06/22 Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Alastair Skeffington' via spctools-discuss
• 2021/06/21 RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Michael Hoopmann' via spctools-discuss
• 2021/06/21 Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Alastair Skeffington' via spctools-discuss
• 2021/06/21 RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' Eric Deutsch
• 2021/06/21 Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Alastair Skeffington' via spctools-discuss
• 2021/06/21 RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Michael Hoopmann' via spctools-discuss
• 2021/06/21 [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Alastair Skeffington' via spctools-discuss
• 2021/05/12 Re: [spctools-discuss] Re: Exporting StPeter´s ng to mzid 'Luis Mendoza' via spctools-discuss
• 2021/05/11 Re: [spctools-discuss] Re: Exporting StPeter´s ng to mzid [email protected]
• 2021/05/10 RE: [spctools-discuss] Re: Exporting StPeter´s ng to mzid Eric Deutsch
• 2021/05/10 RE: [spctools-discuss] Re: Exporting StPeter´s ng to mzid Eric Deutsch
• 2021/05/10 [spctools-discuss] Re: Exporting StPeter´s ng to mzid [email protected]
• 2021/05/08 [spctools-discuss] Re: Exporting StPeter´s ng to mzid Jason Winget
• 2021/05/07 [spctools-discuss] Exporting StPeter´s ng to mzid [email protected]
• 2021/04/27 Re: [spctools-discuss] Re: TPP Error Robert Winkler
• 2021/04/26 Re: [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output dfermin
• 2021/04/24 [spctools-discuss] Re: TPP Error felipe velasquez
• 2021/04/24 Re: [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output Jimmy Eng
• 2021/04/24 Re: [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output 'David Shteynberg' via spctools-discuss
• 2021/04/24 [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output dfermin
• 2021/04/15 Re: [spctools-discuss] PTMProphet command failure (for larger datasets?) 'David Shteynberg' via spctools-discuss
• 2021/04/15 Re: [spctools-discuss] PTMProphet command failure (for larger datasets?) Will Comstock
• 2021/04/14 Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
• 2021/04/13 Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC 'David Shteynberg' via spctools-discuss
• 2021/04/13 RE: [spctools-discuss] Re: convert Splib Eric Deutsch
• 2021/04/13 [spctools-discuss] Re: convert Splib Wenguang
• 2021/04/13 Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
• 2021/04/12 Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC 'David Shteynberg' via spctools-discuss
• 2021/04/12 Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
• 2021/04/12 Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
• 2021/04/12 Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC 'David Shteynberg' via spctools-discuss
• 2021/04/12 Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
• 2021/04/12 Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC 'David Shteynberg' via spctools-discuss
• 2021/04/12 [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
• 2021/04/02 [spctools-discuss] Add Additional fields in spectrast-generated spectral libraries Sebastian Paez
• 2021/03/16 Re: [spctools-discuss] PTMProphet command failure (for larger datasets?) 'David Shteynberg' via spctools-discuss
• 2021/03/16 Re: [spctools-discuss] PTMProphet command failure (for larger datasets?) Will Comstock
• 2021/03/10 Re: [spctools-discuss] job end with error when following PTMprophet tutorial 'David Shteynberg' via spctools-discuss
• 2021/03/10 Re: [spctools-discuss] job end with error when following PTMprophet tutorial Panyue Chen
• 2021/03/09 Re: [spctools-discuss] job end with error when following PTMprophet tutorial 'David Shteynberg' via spctools-discuss
• 2021/03/09 Re: [spctools-discuss] job end with error when following PTMprophet tutorial 'David Shteynberg' via spctools-discuss
• 2021/03/09 Re: [spctools-discuss] job end with error when following PTMprophet tutorial Panyue Chen
• 2021/02/24 Re: [spctools-discuss] SpectraST LibraryBuilding Decoys Juergen Bartel
• 2021/02/22 [spctools-discuss] Re: propogating retention time from .ms2 to .sptxt with spectrast Juergen Bartel
• 2021/02/12 Re: [spctools-discuss] Error in fitted models for MSgf+ search Asif Ahmed
• 2021/02/12 Re: [spctools-discuss] Error in fitted models for MSgf+ search Asif Ahmed
• 2021/02/12 [spctools-discuss] convert Splib Benoit Kunath
• 2021/02/11 Re: [spctools-discuss] TPP working directory - how to change Ladislav Cséfalvay
• 2021/02/10 Re: [spctools-discuss] Error in fitted models for MSgf+ search 'David Shteynberg' via spctools-discuss
• 2021/02/09 Re: [spctools-discuss] Error in fitted models for MSgf+ search Asif Ahmed
• 2021/02/09 Re: [spctools-discuss] Error in fitted models for MSgf+ search 'David Shteynberg' via spctools-discuss
• 2021/02/09 Re: [spctools-discuss] Error in fitted models for MSgf+ search Asif Ahmed
• 2021/02/09 Re: [spctools-discuss] TPP working directory - how to change 'Luis Mendoza' via spctools-discuss
• 2021/02/01 [spctools-discuss] TPP working directory - how to change Ladislav Cséfalvay
• 2021/01/25 [spctools-discuss] propogating retention time from .ms2 to .sptxt with spectrast Matthew Russell
• 2021/01/25 Re: [spctools-discuss] Tutorial DIA Analysis 'David Shteynberg' via spctools-discuss
• 2021/01/25 [spctools-discuss] Tutorial DIA Analysis Cethgar XXX
• 2021/01/24 Re: [spctools-discuss] Error generation while converting raw files 'Luis Mendoza' via spctools-discuss
• 2021/01/21 Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet Soroush F
• 2021/01/21 Re: [spctools-discuss] Error generation while converting raw files giangiacomo beretta
• 2021/01/20 Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet 'David Shteynberg' via spctools-discuss
• 2021/01/20 Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet Soroush F
• 2021/01/20 Re: [spctools-discuss] Error generation while converting raw files 'David Shteynberg' via spctools-discuss
• 2021/01/20 Re: [spctools-discuss] Error generation while converting raw files giangiacomo beretta
• 2021/01/19 Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet 'David Shteynberg' via spctools-discuss
• 2021/01/19 Re: [spctools-discuss] Error generation while converting raw files 'David Shteynberg' via spctools-discuss
• 2021/01/19 [spctools-discuss] Error generation while converting raw files giangiacomo beretta
• 2021/01/18 [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet Soroush F
• 2021/01/01 [spctools-discuss] killjob sudarshan kumar
• 2020/12/23 Re: [spctools-discuss] Is there a threshold of min. peptide probability that ProteinProphet uses to pick the peptides? 'Luis Mendoza' via spctools-discuss
• 2020/12/23 Re: [spctools-discuss] Is there a threshold of min. peptide probability that ProteinProphet uses to pick the peptides? James Go
• 2020/12/21 Re: [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides Phillip Wilmarth
• 2020/12/21 Re: [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides sudarshan kumar
• 2020/12/21 Re: [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides sudarshan kumar
• 2020/12/20 [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides Phillip Wilmarth
• 2020/12/20 [spctools-discuss] comet search parameters for TMT labeled tryptic peptides sudarshan kumar
• 2020/12/17 Re: [spctools-discuss] Related to St Peter tool in TPP Jason Winget
• 2020/12/15 Re: [spctools-discuss] Peptide sequence column in result contains modification mass AZIZ ALNAKLI
• 2020/12/15 Re: [spctools-discuss] Related to St Peter tool in TPP 'Luis Mendoza' via spctools-discuss
• 2020/12/15 Re: [spctools-discuss] Problems in search rita maria de Almeida
• 2020/12/15 Re: [spctools-discuss] iprophet is search showing blank page 'David Shteynberg' via spctools-discuss
• 2020/12/14 [spctools-discuss] iprophet is search showing blank page sudarshan kumar
• 2020/12/14 [spctools-discuss] Peptide sequence column in result contains modification mass sudarshan kumar
• 2020/12/14 Re: [spctools-discuss] Problems in search sudarshan kumar
• 2020/12/14 [spctools-discuss] Related to St Peter tool in TPP Mehar Un Nissa
• 2020/12/14 [spctools-discuss] Problems in search rita maria de Almeida
• 2020/12/11 Re: [spctools-discuss] Endogenous peptide identification sudarshan kumar
• 2020/12/10 RE: [spctools-discuss] Endogenous peptide identification 'Eric Deutsch' via spctools-discuss
• 2020/12/10 [spctools-discuss] Endogenous peptide identification sudarshan kumar
• 2020/12/08 [spctools-discuss] combine fractions, replicates and different parameters Asif Ahmed
• 2020/12/08 Re: [spctools-discuss] Select only top matching protein in spectrast [email protected]
• 2020/12/08 Re: [spctools-discuss] Select only top matching protein in spectrast 'David Shteynberg' via spctools-discuss
• 2020/12/08 [spctools-discuss] Select only top matching protein in spectrast [email protected]
• 2020/12/02 Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed Asif Ahmed
• 2020/12/02 Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed 'David Shteynberg' via spctools-discuss
• 2020/12/02 Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed Asif Ahmed
• 2020/12/02 Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed 'David Shteynberg' via spctools-discuss
• 2020/12/02 Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed Asif Ahmed
• 2020/12/02 Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed 'David Shteynberg' via spctools-discuss
• 2020/12/02 Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed Jimmy Eng
• 2020/11/20 Re: [spctools-discuss] TPP seems never stop in windows...... 姜娜
• 2020/11/20 Re: [spctools-discuss] TPP seems never stop in windows...... 姜娜
• 2020/11/19 Re: [spctools-discuss] TPP seems never stop in windows...... 'Luis Mendoza' via spctools-discuss
• 2020/11/19 [spctools-discuss] TPP seems never stop in windows...... na jiang
• 2020/11/17 Re: [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet 'Luis Mendoza' via spctools-discuss
• 2020/11/17 Re: [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet Soroush F
• 2020/11/17 Re: [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet 'Luis Mendoza' via spctools-discuss
• 2020/11/16 [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet Soroush F
• 2020/11/09 Re: [spctools-discuss] Re: Initiating Petunia GUI after TPP installation Windows Server 2019 'Luis Mendoza' via spctools-discuss
• 2020/11/09 [spctools-discuss] Re: Initiating Petunia GUI after TPP installation Windows Server 2019 Miguel Cosenza
• 2020/11/06 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
• 2020/11/06 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'David Shteynberg' via spctools-discuss
• 2020/11/06 Re: [spctools-discuss] Linux Build Error 'Luis Mendoza' via spctools-discuss
• 2020/11/06 Re: [spctools-discuss] Linux Build Error 'David Shteynberg' via spctools-discuss
• 2020/11/06 [spctools-discuss] Linux Build Error Nathan Wamsley
• 2020/11/04 [spctools-discuss] Initiating Petunia GUI after TPP installation Windows Server 2019 Miguel Cosenza
• 2020/10/24 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
• 2020/10/23 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
• 2020/10/22 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
• 2020/10/22 Re: [spctools-discuss] DIA to mzML question Science Gurl
• 2020/10/22 Re: [spctools-discuss] DIA to mzML question Mark Athanason
• 2020/10/22 Re: [spctools-discuss] DIA to mzML question Science Gurl
• 2020/10/22 Re: [spctools-discuss] DIA to mzML question Mark Athanason
• 2020/10/22 Re: [spctools-discuss] DIA to mzML question Science Gurl
• 2020/10/22 Re: [spctools-discuss] DIA to mzML question 'David Shteynberg' via spctools-discuss
• 2020/10/22 [spctools-discuss] DIA to mzML question jane n
• 2020/10/22 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'David Shteynberg' via spctools-discuss
• 2020/10/22 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
• 2020/10/22 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
• 2020/10/22 Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'David Shteynberg' via spctools-discuss
• 2020/10/21 RE: [spctools-discuss] maximum fasta file size 'Eric Deutsch' via spctools-discuss

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