spctools-discuss
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2021/01/25
[spctools-discuss] propogating retention time from .ms2 to .sptxt with spectrast
Matthew Russell
2021/01/25
Re: [spctools-discuss] Tutorial DIA Analysis
'David Shteynberg' via spctools-discuss
2021/01/25
[spctools-discuss] Tutorial DIA Analysis
Cethgar XXX
2021/01/24
Re: [spctools-discuss] Error generation while converting raw files
'Luis Mendoza' via spctools-discuss
2021/01/21
Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet
Soroush F
2021/01/21
Re: [spctools-discuss] Error generation while converting raw files
giangiacomo beretta
2021/01/20
Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet
'David Shteynberg' via spctools-discuss
2021/01/20
Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet
Soroush F
2021/01/20
Re: [spctools-discuss] Error generation while converting raw files
'David Shteynberg' via spctools-discuss
2021/01/20
Re: [spctools-discuss] Error generation while converting raw files
giangiacomo beretta
2021/01/19
Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet
'David Shteynberg' via spctools-discuss
2021/01/19
Re: [spctools-discuss] Error generation while converting raw files
'David Shteynberg' via spctools-discuss
2021/01/19
[spctools-discuss] Error generation while converting raw files
giangiacomo beretta
2021/01/18
[spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet
Soroush F
2021/01/01
[spctools-discuss] killjob
sudarshan kumar
2020/12/23
Re: [spctools-discuss] Is there a threshold of min. peptide probability that ProteinProphet uses to pick the peptides?
'Luis Mendoza' via spctools-discuss
2020/12/23
Re: [spctools-discuss] Is there a threshold of min. peptide probability that ProteinProphet uses to pick the peptides?
James Go
2020/12/21
Re: [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides
Phillip Wilmarth
2020/12/21
Re: [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides
sudarshan kumar
2020/12/21
Re: [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides
sudarshan kumar
2020/12/20
[spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides
Phillip Wilmarth
2020/12/20
[spctools-discuss] comet search parameters for TMT labeled tryptic peptides
sudarshan kumar
2020/12/17
Re: [spctools-discuss] Related to St Peter tool in TPP
Jason Winget
2020/12/15
Re: [spctools-discuss] Peptide sequence column in result contains modification mass
AZIZ ALNAKLI
2020/12/15
Re: [spctools-discuss] Related to St Peter tool in TPP
'Luis Mendoza' via spctools-discuss
2020/12/15
Re: [spctools-discuss] Problems in search
rita maria de Almeida
2020/12/15
Re: [spctools-discuss] iprophet is search showing blank page
'David Shteynberg' via spctools-discuss
2020/12/14
[spctools-discuss] iprophet is search showing blank page
sudarshan kumar
2020/12/14
[spctools-discuss] Peptide sequence column in result contains modification mass
sudarshan kumar
2020/12/14
Re: [spctools-discuss] Problems in search
sudarshan kumar
2020/12/14
[spctools-discuss] Related to St Peter tool in TPP
Mehar Un Nissa
2020/12/14
[spctools-discuss] Problems in search
rita maria de Almeida
2020/12/11
Re: [spctools-discuss] Endogenous peptide identification
sudarshan kumar
2020/12/10
RE: [spctools-discuss] Endogenous peptide identification
'Eric Deutsch' via spctools-discuss
2020/12/10
[spctools-discuss] Endogenous peptide identification
sudarshan kumar
2020/12/08
[spctools-discuss] combine fractions, replicates and different parameters
Asif Ahmed
2020/12/08
Re: [spctools-discuss] Select only top matching protein in spectrast
shubha...@gmail.com
2020/12/08
Re: [spctools-discuss] Select only top matching protein in spectrast
'David Shteynberg' via spctools-discuss
2020/12/08
[spctools-discuss] Select only top matching protein in spectrast
shubha...@gmail.com
2020/12/02
Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed
Asif Ahmed
2020/12/02
Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed
'David Shteynberg' via spctools-discuss
2020/12/02
Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed
Asif Ahmed
2020/12/02
Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed
'David Shteynberg' via spctools-discuss
2020/12/02
Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed
Asif Ahmed
2020/12/02
Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed
'David Shteynberg' via spctools-discuss
2020/12/02
Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed
Jimmy Eng
2020/11/20
Re: [spctools-discuss] TPP seems never stop in windows......
姜娜
2020/11/20
Re: [spctools-discuss] TPP seems never stop in windows......
姜娜
2020/11/19
Re: [spctools-discuss] TPP seems never stop in windows......
'Luis Mendoza' via spctools-discuss
2020/11/19
[spctools-discuss] TPP seems never stop in windows......
na jiang
2020/11/17
Re: [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet
'Luis Mendoza' via spctools-discuss
2020/11/17
Re: [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet
Soroush F
2020/11/17
Re: [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet
'Luis Mendoza' via spctools-discuss
2020/11/16
[spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet
Soroush F
2020/11/09
Re: [spctools-discuss] Re: Initiating Petunia GUI after TPP installation Windows Server 2019
'Luis Mendoza' via spctools-discuss
2020/11/09
[spctools-discuss] Re: Initiating Petunia GUI after TPP installation Windows Server 2019
Miguel Cosenza
2020/11/06
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/11/06
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
'David Shteynberg' via spctools-discuss
2020/11/06
Re: [spctools-discuss] Linux Build Error
'Luis Mendoza' via spctools-discuss
2020/11/06
Re: [spctools-discuss] Linux Build Error
'David Shteynberg' via spctools-discuss
2020/11/06
[spctools-discuss] Linux Build Error
Nathan Wamsley
2020/11/04
[spctools-discuss] Initiating Petunia GUI after TPP installation Windows Server 2019
Miguel Cosenza
2020/10/24
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/10/23
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/10/22
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/10/22
Re: [spctools-discuss] DIA to mzML question
Science Gurl
2020/10/22
Re: [spctools-discuss] DIA to mzML question
Mark Athanason
2020/10/22
Re: [spctools-discuss] DIA to mzML question
Science Gurl
2020/10/22
Re: [spctools-discuss] DIA to mzML question
Mark Athanason
2020/10/22
Re: [spctools-discuss] DIA to mzML question
Science Gurl
2020/10/22
Re: [spctools-discuss] DIA to mzML question
'David Shteynberg' via spctools-discuss
2020/10/22
[spctools-discuss] DIA to mzML question
jane n
2020/10/22
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
'David Shteynberg' via spctools-discuss
2020/10/22
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/10/22
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/10/22
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
'David Shteynberg' via spctools-discuss
2020/10/21
RE: [spctools-discuss] maximum fasta file size
'Eric Deutsch' via spctools-discuss
2020/10/21
Re: [spctools-discuss] maximum fasta file size
AZIZ ALNAKLI
2020/10/21
RE: [spctools-discuss] maximum fasta file size
'Eric Deutsch' via spctools-discuss
2020/10/21
[spctools-discuss] Run TPP on linux without root
Jieyi Xiong
2020/10/20
[spctools-discuss] maximum fasta file size
AZIZ ALNAKLI
2020/10/20
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/10/20
Re: [spctools-discuss] SpectraST LibraryBuilding Decoys
Juergen Bartel
2020/10/19
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
'David Shteynberg' via spctools-discuss
2020/10/19
RE: [spctools-discuss] SpectraST LibraryBuilding Decoys
'Eric Deutsch' via spctools-discuss
2020/10/19
[spctools-discuss] SpectraST LibraryBuilding Decoys
Juergen Bartel
2020/10/17
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/10/16
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/10/13
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
'David Shteynberg' via spctools-discuss
2020/10/13
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/10/12
RE: [spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8
'Eric Deutsch' via spctools-discuss
2020/10/11
[spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8
Law
2020/10/09
Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3
'Luis Mendoza' via spctools-discuss
2020/10/09
[spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8
Wenhao
2020/10/07
[spctools-discuss] TPP 5.2.0 installation error CentOS 7.8
Wenhao
2020/10/06
[spctools-discuss] ProteinProphet sticking in findDegenGroups3
Emily Kawaler
2020/10/05
Re: [spctools-discuss] X!Tandem- Help please
Robert Winkler
2020/10/05
Re: [spctools-discuss] LFQ
Robert Winkler
2020/10/02
Re: [spctools-discuss] LFQ
'Luis Mendoza' via spctools-discuss
2020/10/02
Re: [spctools-discuss] Converting Orbitrap Eclipse files to mzML
Laura Muehlbauer
2020/10/02
[spctools-discuss] LFQ
vipulb...@gmail.com
2020/10/01
Re: [spctools-discuss] X!Tandem- Help please
vipulb...@gmail.com
2020/10/01
Re: [spctools-discuss] X!Tandem- Help please
vipulb...@gmail.com
2020/10/01
Re: [spctools-discuss] Converting Orbitrap Eclipse files to mzML
Jason Winget
2020/09/30
Re: [spctools-discuss] Converting Orbitrap Eclipse files to mzML
'David Shteynberg' via spctools-discuss
2020/09/30
[spctools-discuss] Converting Orbitrap Eclipse files to mzML
Laura Muehlbauer
2020/09/30
Re: [spctools-discuss] X!Tandem- Help please
Jimmy Eng
2020/09/30
Re: [spctools-discuss] X!Tandem- Help please
Robert Winkler
2020/09/29
[spctools-discuss] X!Tandem- Help please
vipulb...@gmail.com
2020/09/28
[spctools-discuss] Re: X!Tandem taking too long
vipulb...@gmail.com
2020/09/28
[spctools-discuss] Re: X!Tandem taking too long
vipulb...@gmail.com
2020/09/28
[spctools-discuss] X!Tandem taking too long
vipulb...@gmail.com
2020/09/25
Re: [spctools-discuss] ProtyQuant for comparing TPP samples (.pepXML)
'Luis Mendoza' via spctools-discuss
2020/09/25
[spctools-discuss] ProtyQuant for comparing TPP samples (.pepXML)
Robert
2020/09/16
Re: [spctools-discuss] Crosslink FDR from PeptideProphet
Lindsey Ulmer
2020/09/16
Re: [spctools-discuss] Crosslink FDR from PeptideProphet
'David Shteynberg' via spctools-discuss
2020/09/16
[spctools-discuss] Crosslink FDR from PeptideProphet
Lindsey Ulmer
2020/09/15
[spctools-discuss] Consensus spectral library with split RT
Annie Ha
2020/09/14
Re: [spctools-discuss] Comet fixed and variable modifications
Jimmy Eng
2020/09/14
[spctools-discuss] Comet fixed and variable modifications
Francesco Demetrio Lofaro
2020/09/14
[spctools-discuss] Unique peptide
Francesco Demetrio Lofaro
2020/09/07
Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio
'Alastair Skeffington' via spctools-discuss
2020/08/31
Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio
'Alastair Skeffington' via spctools-discuss
2020/08/26
Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio
'David Shteynberg' via spctools-discuss
2020/08/26
Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio
'Alastair Skeffington' via spctools-discuss
2020/08/25
Re: [spctools-discuss] Query related to protein abundances in TPP
Mehar Un Nissa
2020/08/25
Re: [spctools-discuss] Query related to protein abundances in TPP
Robert Winkler
2020/08/25
[spctools-discuss] Query related to protein abundances in TPP
Mehar Un Nissa
2020/08/17
Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio
'Alastair Skeffington' via spctools-discuss
2020/08/17
Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio
'David Shteynberg' via spctools-discuss
2020/08/17
Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio
'Alastair Skeffington' via spctools-discuss
2020/08/11
Re: [spctools-discuss] Query related to PTMprophet results in TPP
'Luis Mendoza' via spctools-discuss
2020/08/09
Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
2020/08/07
[spctools-discuss] Query related to PTMprophet results in TPP
Mehar Un Nissa
2020/08/06
Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio
'Alastair Skeffington' via spctools-discuss
2020/08/05
Re: [spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio
'David Shteynberg' via spctools-discuss
2020/08/05
[spctools-discuss] how to specify heavy label for oxidised methionine in ASAPRatio
'Alastair Skeffington' via spctools-discuss
2020/08/03
[spctools-discuss] 15N/14N guidence
'Alastair Skeffington' via spctools-discuss
2020/07/29
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Kate Mostovenko
2020/07/29
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Jimmy Eng
2020/07/29
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Jimmy Eng
2020/07/29
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Kate Mostovenko
2020/07/29
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Jimmy Eng
2020/07/29
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Kate Mostovenko
2020/07/27
Re: [spctools-discuss] New to TPP: finding FDR corresponding to probability
'David Shteynberg' via spctools-discuss
2020/07/27
[spctools-discuss] New to TPP: finding FDR corresponding to probability
RS
2020/07/24
[spctools-discuss] TMT labeling efficiency test
Josh Yu
2020/07/24
Re: [spctools-discuss] Are these crapome?
Josh Yu
2020/07/21
Re: [spctools-discuss] New at TTP. Problem with PSM validation
Carlos Humberto Paván
2020/07/20
Re: [spctools-discuss] New at TTP. Problem with PSM validation
'David Shteynberg' via spctools-discuss
2020/07/20
Re: [spctools-discuss] New at TTP. Problem with PSM validation
Carlos Humberto Paván
2020/07/20
Re: [spctools-discuss] New at TTP. Problem with PSM validation
'David Shteynberg' via spctools-discuss
2020/07/19
[spctools-discuss] Re: New at TTP. Problem with PSM validation
Carlos Humberto Paván
2020/07/18
[spctools-discuss] New at TTP. Problem with PSM validation
Carlos Humberto Paván
2020/07/16
[spctools-discuss] QualScore - 0 dtas written
Miguel Cosenza
2020/07/11
Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
2020/07/09
RE: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
'Eric Deutsch' via spctools-discuss
2020/07/08
Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
2020/07/07
RE: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
'Eric Deutsch' via spctools-discuss
2020/07/07
Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
2020/07/07
RE: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
'Eric Deutsch' via spctools-discuss
2020/07/07
[spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
2020/07/07
[spctools-discuss] SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
2020/06/25
RE: [spctools-discuss] Re: Specifying comet param file in batch file
Mark Athanason
2020/06/25
[spctools-discuss] Re: Specifying comet param file in batch file
Jimmy Eng
2020/06/25
[spctools-discuss] Specifying comet param file in batch file
Mark Athanason
2020/06/23
[spctools-discuss] Re: Problem with SpectraST
paul.ungeth...@onlinehome.de
2020/06/10
Re: [spctools-discuss] Spectral library generation
Aaron Robinson
2020/06/10
Re: [spctools-discuss] Spectral library generation
Srinivas Srikanth
2020/06/09
[spctools-discuss] Re: Percolator Error in TPP
Gabrielle H
2020/06/09
Re: [spctools-discuss] Percolator Error in TPP
Gabrielle H
2020/06/09
Re: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
Javan Okendo
2020/06/09
RE: [spctools-discuss] Spectral library generation
'Eric Deutsch' via spctools-discuss
2020/06/09
RE: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
'Eric Deutsch' via spctools-discuss
2020/06/09
Re: [spctools-discuss] Percolator Error in TPP
'Luis Mendoza' via spctools-discuss
2020/06/09
Re: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
Phillip Wilmarth
2020/06/09
[spctools-discuss] Re: Percolator Error in TPP
Gabrielle H
2020/06/09
Re: [spctools-discuss] Percolator Error in TPP
Gabrielle H
2020/06/09
Re: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
Javan Okendo
2020/06/08
[spctools-discuss] Spectral library generation
Srinivas Srikanth
2020/06/08
[spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
Phillip Wilmarth
2020/06/08
[spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
Jimmy Eng
2020/06/08
[spctools-discuss] Re: Percolator Error in TPP
Jimmy Eng
2020/06/08
Re: [spctools-discuss] Percolator Error in TPP
'Luis Mendoza' via spctools-discuss
2020/06/08
[spctools-discuss] Percolator Error in TPP
Gabrielle H
2020/06/03
[spctools-discuss] Re: Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib.
Henry Lam
2020/06/03
[spctools-discuss] Re: Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib.
Henry Lam
2020/06/01
[spctools-discuss] Trans-Proteomic Pipeline workshop at ASMS Tuesday 10am Central time
'Eric Deutsch' via spctools-discuss
2020/05/28
[spctools-discuss] Re: Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib.
Wenguang
2020/05/27
[spctools-discuss] Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib.
Ray
2020/05/27
Re: [spctools-discuss] TPP Error
Javan Okendo
2020/05/27
[spctools-discuss] TPP Error
Nimai Charan Mahanandia
2020/05/09
[spctools-discuss] Re: ASAPRatio for 15N?
Carlo de Oliveira Martins
2020/04/27
RE: [spctools-discuss] SpectrasT can't recognize Protein N-term acetylation modification
'Eric Deutsch' via spctools-discuss
2020/04/25
[spctools-discuss] SpectrasT can't recognize Protein N-term acetylation modification
RayS
2020/04/15
Re: [spctools-discuss] Kojak File not Found
Michael Hoopmann
2020/04/13
Re: [spctools-discuss] Help in geneting Sequest and X!Tandem parameter files
Jimmy Eng
2020/04/13
Re: [spctools-discuss] Help in geneting Sequest and X!Tandem parameter files
Javan Okendo
2020/04/13
Re: [spctools-discuss] Help in geneting Sequest and X!Tandem parameter files
Jimmy Eng
2020/04/13
[spctools-discuss] Re: Error while running prophets with the comet results from searchGUI
JAVAN OKENDO
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