Hello Zeyu,
You're using the TPP's "trapper" program. Trapper is designed for data
from Agilent's *MassHunter* program. This data is stored in a .d
folder. However, there is a confusing situation: two different Agilent
formats use .d folders. Your .d folder has the different format:
analysis.yep. I'm guessing that you're probably using data acquired
with Agilent's *ChemStation* program. Trapper does not handle .yep.
But, msconvert, which is included with the TPP and comes from the
ProteoWizard (pwiz) project, might handle this type of data. I'm
forwarding this message to the pwiz discussion list as well, and
hopefully they can suggest a way to proceed.
There is an
-Natalie
On 2/10/10 11:16 PM, zeyu sun wrote:
Hi, I have a problem to convert the .d folder from a ETD trap to xml format. I
have no problem to convert .d folderto xml for spectrum from Q-tof. Here is
what I saw in the commend line:
Settings:
centroid scans: 0
compress scans: 0
verbose mode: 1
skip checksum: 0
deisotope:0
requirePeptideLikeAbundanceProfile: 0
relativeTolerance: 0
absoluteTolerance: 0
limitChargeState:0
maxChargeState: 0
mzML mode: 0
mzXML mode: 1
input filename: c:/Inetpub/wwwroot/ISB/data/ZSMOAC.D
output filename: c:/Inetpub/wwwroot/ISB/data/ZSMOAC.mzXML
ERROR at .\MHDACWrapper.cpp, 60:
HR = -2147024894
OpenDataFile
unable to open c:/Inetpub/wwwroot/ISB/data/ZSMOAC.D with MassHunter interface
*Command FAILED*
by the way, the .d folder comprised of a analysis.yep file (very big,
which I assume is where the MS data stored), a LCDIAG.reg file, a
extension.baf file, a sample.mac file, 3 txt files named
LCMETHODAUDITTRAIL, lcparms, RUN, and a folder ETD_LONGCHIP_100128.M.
Any thought how to do the conversion?
Thank you very much!
--
Zeyu Sun
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