I am curious what version of the TPP you're trying to use. The current windows installer should install and configure almost everything for you (expect for ActivePerl, which you must install on your own; see the related thread from today.) Why do you need VisualBasic? Also Java is not necessary for the main TPP-- although some ancillary programs such as qualscore do make use of it. Also, what issues did you have with Internet Explorer? We primarily develop towards modern standards-compliant browsers such as firefox or chrome, but IE should still work. Please let me know the version of your Windows OS as well as the version of the TPP that you're installing.

-Natalie

On 3/9/10 6:34 AM, Dr. Osama Albarbarawi wrote:
Hi everybody,
I'm new to ISB/SPC Trans Proteomic Pipeline, I have just installed. I have faced many difficulty layers to solve compatibility problems between internet explorer, Java, perl , visual basic+ ...etc in fin I managed to get it installed.

my my aim is to get my mascot search data(in .dat format) converted to protXML format: I have the following error every time I try to convert my mzXML files to pepXML:
/
/
/*command "c:\Inetpub\tpp-bin\Mascot2XML c:/Inetpub/wwwroot/ISB/data/F981122.dat -Dc:/Inetpub/wwwroot/ISB/data/ipi.HUMAN.v3.50.fasta -Etrypsin -desc" failed: Unknown error*/
/
/
/also/
/ /
/*c:/Inetpub/wwwroot/ISB/data/F981122.pep.xml* [ Unreadable! ]/
/
/
/
/
Thank you


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