Hi Natalie
I have
1. *Windows XP Professional, Service Pack 3*
2. *ActivePerl version 5.10.1.1007*
3. *Apache HTTP server version 2.2*
4. *TPP v4.3 JETSTREAM rev 1, Build 200909091257 (MinGW)*
*I did install Apache webserver as i was not able to manage the IIS. also I
did edit the httpd.confg file by adding those lines below (which might not
be necessary with the new TPP, but without it I couldn't manage to start the
TPP):*
*
Alias /isb-bin "C:/Inetpub/isb-bin"
<Directory "C:/Inetpub/isb-bin">
Options Indexes MultiViews
AllowOverride None
Order allow,deny
Allow from all
</Directory>
Alias /tpp-bin "C:/Inetpub/tpp-bin"
<Directory "C:/Inetpub/tpp-bin">
Options Indexes MultiViews ExecCGI
AllowOverride None
Order allow,deny
Allow from all
AddHandler cgi-script .cgi .pl
ScriptInterpreterSource Registry
PassEnv WEBSERVER_ROOT
</Directory>
Alias /ISB "C:/Inetpub/wwwroot/ISB"
Alias /isb "C:/Inetpub/wwwroot/ISB"
<Directory "C:/Inetpub/wwwroot/ISB">
Options Indexes MultiViews Includes
AllowOverride None
Order allow,deny
Allow from all
AddType text/html .shtml
AddHandler server-parsed .shtml
PassEnv WEBSERVER_ROOT
</Directory>
thank you for your time
Osama
*
On Tue, Mar 9, 2010 at 6:36 PM, Natalie Tasman <[email protected]
> wrote:
> I am curious what version of the TPP you're trying to use. The current
> windows installer should install and configure almost everything for you
> (expect for ActivePerl, which you must install on your own; see the related
> thread from today.) Why do you need VisualBasic? Also Java is not
> necessary for the main TPP-- although some ancillary programs such as
> qualscore do make use of it. Also, what issues did you have with Internet
> Explorer? We primarily develop towards modern standards-compliant browsers
> such as firefox or chrome, but IE should still work. Please let me know the
> version of your Windows OS as well as the version of the TPP that you're
> installing.
>
> -Natalie
>
>
> On 3/9/10 6:34 AM, Dr. Osama Albarbarawi wrote:
>
> Hi everybody,
> I'm new to ISB/SPC Trans Proteomic Pipeline, I have just installed. I have
> faced many difficulty layers to solve compatibility problems between
> internet explorer, Java, perl , visual basic+ ...etc in fin I managed to get
> it installed.
>
> my my aim is to get my mascot search data(in .dat format) converted to
> protXML format:
> I have the following error every time I try to convert my mzXML files to
> pepXML:
> *
> *
> *command "c:\Inetpub\tpp-bin\Mascot2XML
> c:/Inetpub/wwwroot/ISB/data/F981122.dat
> -Dc:/Inetpub/wwwroot/ISB/data/ipi.HUMAN.v3.50.fasta -Etrypsin -desc" failed:
> Unknown error*
> *
> *
> *also*
> * *
> *c:/Inetpub/wwwroot/ISB/data/F981122.pep.xml [ Unreadable! ]*
> *
> *
> *
> *
> Thank you
>
>
> *
> *
>
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