All sound conjectures, but hard to say without laying eyes on the data. Can you zip one up and post to the group's files area?
On Thu, Mar 18, 2010 at 7:04 AM, GATTACA <[email protected]> wrote: > Hello > > We have about 30 mzXML files we have analyzed using X!Tandem/TPP > without any problems. However for three of these files we cannot run > QualScore on them or SpectraST. Qualscore throws out a Java exception > error and SpectraST just hangs never finishing (we let it run > overnight). > > We tried to extract the spectra from these files using "MzXML2Search - > dta" but even that program hangs and never finishes extracting the > spectra. > > Perhaps the mzXML files are corrupt or have incorrect XML form? > Is there a program to check or validate the form of an mzXML file? > > We are running TPP 4.3.1 on RHEL 5.2 (64bit). > X!Tandem searches on the files went without a problem, xinteract also > gave no errors. We ran xinteract with: -Opd -drev -p0 > > > Thanks in advance for any and all help. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
