I've tried getting this to work for a while now, but I keep getting an error code of 256. I've tried different forms of the command, but this is an example of one I've tried:
/usr/local/src/tpp-4.3.1/build/linux/xinteract -Ndata.pep.xml -iP pipeline0.01/data/test-forward_tandem_1.pep.xml pipeline0.01/data/test- forward_omssa_1.pep.xml pipeline0.01/data/test-forward_tide_1.pep.xml /usr/local/src/tpp-4.3.1/build/linux/xinteract (TPP v4.3 JETSTREAM rev 1, Build 201005201540 (linux)) running: "/usr/local/tpp/bin/InteractParser 'data.pep.xml' 'pipeline0.01/data/test-forward_tandem_1.pep.xml' 'pipeline0.01/data/ test-forward_omssa_1.pep.xml' 'pipeline0.01/data/test- forward_tide_1.pep.xml' -L'7'" file 1: pipeline0.01/data/test-forward_tandem_1.pep.xml file 2: pipeline0.01/data/test-forward_omssa_1.pep.xml file 3: pipeline0.01/data/test-forward_tide_1.pep.xml processed altogether 340 results results written to file /home/jashi/pipeline/data.pep.shtml command completed in 0 sec running: "/usr/local/tpp/bin/PeptideProphetParser 'data.pep.xml'" (X! Tandem) WARNING: Found unanticipated cleavage in refinement mode. Turning off NTT model. init with X! Tandem trypsin two different search engines specified: X! Tandem and OMSSA command "/usr/local/tpp/bin/PeptideProphetParser 'data.pep.xml'" exited with non-zero exit code: 256 QUIT - the job is incomplete -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
