spctools-discuss  

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• [spctools-discuss] tryspin/P Rachel
  • Re: [spctools-discuss] tryspin/P David Shteynberg
• [spctools-discuss] Including (custom) modifications in Tandem2XML conversion? Vadim Patsalo
• [spctools-discuss] Job xinteract wrong! ! ! help~~~ jason cao
  • Re: [spctools-discuss] Job xinteract wrong! ! ! help~~~ Vishal Swaroop
  • Re: [spctools-discuss] Job xinteract wrong! ! ! help~~~ David Shteynberg
  • Re: [spctools-discuss] Job xinteract wrong! ! ! help~~~ Vishal Swaroop
• [spctools-discuss] protein and peptide FDR Luciana B
  • Re: [spctools-discuss] protein and peptide FDR Hannes Röst
• [spctools-discuss] Is there a sequest equivalent or port that runs from linux and/or written in Java? David Zhao
  • Re: [spctools-discuss] Is there a sequest equivalent or port that runs from linux and/or written in Java? Joseph Slagel
  • Re: [spctools-discuss] Is there a sequest equivalent or port that runs from linux and/or written in Java? David Zhao
• Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Joseph Slagel
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Joseph Slagel
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
  • Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Stanislav Luban
• [spctools-discuss] Can XInteract support MSGF+? liguilin223
  • Re: [spctools-discuss] Can XInteract support MSGF+? Jimmy Eng
  • Re: [spctools-discuss] Can XInteract support MSGF+? David Shteynberg
  • Re: [spctools-discuss] Can XInteract support MSGF+? liguilin223
  • Re: [spctools-discuss] Can XInteract support MSGF+? David Shteynberg
  • [spctools-discuss] Re: Can XInteract support MSGF+? liguilin223
• [spctools-discuss] How about extracting confident PSMs according to the charge states of precursors from decoy database search results? Jorey Dong
• [spctools-discuss] Xinteract - Do not merge input checkbox leads to deletion of pep.xml output shakembt
• [spctools-discuss] ASAP ratio parameters Ana
• [spctools-discuss] date instead of file name in after dat 2 pepxml Delphine
  • Re: [spctools-discuss] date instead of file name in after dat 2 pepxml Luis Mendoza
• [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup Robert
  • Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup Luis Mendoza
  • Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup Robert
  • Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup Robert Winkler
  • Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup Robert
• Re: [spctools-discuss] Extracting mzXML peaks Ilan Beer
• [spctools-discuss] Unable to do PeptideProphet in bulk Kate Mostovenko
  • [spctools-discuss] Re: Unable to do PeptideProphet in bulk [email protected]
  • [spctools-discuss] Re: Unable to do PeptideProphet in bulk Kate Mostovenko
  • Re: [spctools-discuss] Re: Unable to do PeptideProphet in bulk Luis Mendoza
  • Re: [spctools-discuss] Re: Unable to do PeptideProphet in bulk Kate Mostovenko
• [spctools-discuss] XPRESS values [email protected]
  • Re: [spctools-discuss] XPRESS values Jimmy Eng
• [spctools-discuss] Creating a SpectraST library -- not enough decoy matches for iProphet discriminant? Vadim Patsalo
• [spctools-discuss] Command Failed_Return Code 65280 xianyinlai
  • Re: [spctools-discuss] Command Failed_Return Code 65280 David Shteynberg
  • Re: [spctools-discuss] Command Failed_Return Code 65280 Brian Hampton
  • Re: [spctools-discuss] Command Failed_Return Code 65280 David Shteynberg
  • Re: [spctools-discuss] Command Failed_Return Code 65280 Brian Hampton
  • Re: [spctools-discuss] Command Failed_Return Code 65280 xianyinlai
  • Re: [spctools-discuss] Command Failed_Return Code 65280 xianyinlai
• [spctools-discuss] xinteract of tpp4.7.0 fails with myrimatch2.138 loblum
• [spctools-discuss] Apache user on RHEL for TPP Brian Hampton
  • Re: [spctools-discuss] Apache user on RHEL for TPP Joseph Slagel
• [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Brian Hampton
  • Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Joseph Slagel
  • Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Brian Hampton
  • Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Brian Hampton
  • Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Brian Hampton
  • Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Joseph Slagel
  • Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Amit Yadav
  • Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Joseph Slagel
  • Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Brian Hampton
• [spctools-discuss] Comet [email protected]
  • Re: [spctools-discuss] Comet Jimmy Eng
  • Re: [spctools-discuss] Comet [email protected]
  • Re: [spctools-discuss] Comet Jimmy Eng
• [spctools-discuss] Conversion of GC-MS RAW file into excel file Karthika Ranganathan
  • Re: [spctools-discuss] Conversion of GC-MS RAW file into excel file inamul hasan.madar
• [spctools-discuss] TPP 4.7.0 is now available Joseph Slagel
  • [spctools-discuss] Re: TPP 4.7.0 is now available loblum
  • Re: [spctools-discuss] Re: TPP 4.7.0 is now available Joseph Slagel
  • Re: [spctools-discuss] Re: TPP 4.7.0 is now available loblum
  • Re: [spctools-discuss] Re: TPP 4.7.0 is now available Joseph Slagel
  • Re: [spctools-discuss] Re: TPP 4.7.0 is now available Robert Winkler
  • Re: [spctools-discuss] Re: TPP 4.7.0 is now available Joseph Slagel
  • Re: [spctools-discuss] Re: TPP 4.7.0 is now available loblum
  • Re: [spctools-discuss] Re: TPP 4.7.0 is now available Joseph Slagel
• [spctools-discuss] TPP mixture model failing Brian Hampton
  • Re: [spctools-discuss] TPP mixture model failing David Shteynberg
  • Re: [spctools-discuss] TPP mixture model failing Brian Hampton
  • Re: [spctools-discuss] TPP mixture model failing David Shteynberg
  • Re: [spctools-discuss] TPP mixture model failing Brian Hampton
  • Re: [spctools-discuss] TPP mixture model failing Luis Mendoza
• [spctools-discuss] Peptide Prophet ERROR user1
  • Re: [spctools-discuss] Peptide Prophet ERROR David Shteynberg
  • Re: [spctools-discuss] Peptide Prophet ERROR user1
  • Re: [spctools-discuss] Peptide Prophet ERROR user1
  • [spctools-discuss] Xpress problem w/ diglycyl-lysine + SILAC-lysine Jesse
• [spctools-discuss] Mascot2ML on linux boost::exception_detail::clone_impl error GATTACA
• [spctools-discuss] Validation of mzXML schema failed using XSD.EXE utility Josip Miller
  • Re: [spctools-discuss] Validation of mzXML schema failed using XSD.EXE utility Josip Miller
  • Re: [spctools-discuss] Validation of mzXML schema failed using XSD.EXE utility Joseph Slagel
• [spctools-discuss] Question about MRM transition lists created by SpectraST zhaohaiyi888
• [spctools-discuss] Very elementary question Maryam Afkarian
  • Re: [spctools-discuss] Very elementary question David Shteynberg
• [spctools-discuss] Total Independent Spectra Definition Robert Jones
  • [spctools-discuss] Re: Total Independent Spectra Definition Robert Jones
• [spctools-discuss] combine FASTA files zeyu sun
  • Re: [spctools-discuss] combine FASTA files Joseph Slagel
  • Re: [spctools-discuss] combine FASTA files Michael Hoopmann
  • [spctools-discuss] Re: combine FASTA files zeyu sun
• [spctools-discuss] TPP FDR Tutorial (How to use the decoy features) Robert Jones
  • [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Bjorn
  • [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Bjorn
  • [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Robert Jones
  • Re: [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Joseph Slagel
  • Re: [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Brian Hampton
  • Re: [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Joseph Slagel
  • Re: [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Brian Hampton
• [spctools-discuss] Question on setting modifications for searching Konstantinos Vougas
  • Re: [spctools-discuss] Question on setting modifications for searching Jimmy Eng
  • Re: [spctools-discuss] Question on setting modifications for searching Konstantinos Vougas
• Re: [spctools-discuss] Re: A question about pepXML files. Hannes Röst
  • Re: [spctools-discuss] Re: A question about pepXML files. 钟传奇
• [spctools-discuss] CLIPPER, where do i get it? Konstantinos Vougas
  • Re: [spctools-discuss] CLIPPER, where do i get it? Ulrich auf dem Keller
  • Re: [spctools-discuss] CLIPPER, where do i get it? Konstantinos Vougas
• [spctools-discuss] sorting prot.xml output by number of unique peptides maryamafkarian
  • Re: [spctools-discuss] sorting prot.xml output by number of unique peptides Luis Mendoza
  • Re: [spctools-discuss] sorting prot.xml output by number of unique peptides Maryam Afkarian
• Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box Anton Gurkov
  • Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box Joseph Slagel
• [spctools-discuss] extract intensity values for peaks with defined m/z values from mzxml files Liang QIAO
• [spctools-discuss] How to extract the intensities for peaks with a specific m/z from the mzxml file Liang QIAO
  • [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Jason Winget
  • Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Hannes Röst
  • Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Jason Winget
  • Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Hannes Röst
  • Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Liang QIAO
  • Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Taejoon Kwon
  • [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Liang QIAO
• [spctools-discuss] Decoy issue srihari sharma
  • Re: [spctools-discuss] Decoy issue Jimmy Eng
  • Re: [spctools-discuss] Decoy issue srihari sharma
  • Re: [spctools-discuss] Decoy issue Jimmy Eng
  • Re: [spctools-discuss] Decoy issue srihari sharma
  • Re: [spctools-discuss] Decoy issue David Shteynberg
  • [spctools-discuss] Re: Decoy issue srihari sharma sharma
• [spctools-discuss] Next TPP course March 31 - April 4 Eric Deutsch
• [spctools-discuss] ERROR: two instrument models: LTQ Orbitrap XL and LTQ Orbitrap Adrian Guthals
  • [spctools-discuss] Re: ERROR: two instrument models: LTQ Orbitrap XL and LTQ Orbitrap Adrian Guthals
  • Re: [spctools-discuss] ERROR: two instrument models: LTQ Orbitrap XL and LTQ Orbitrap David Shteynberg
• [spctools-discuss] Developing scoring scheme compatible with PeptideProphet Jorey Dong
• Re: [spctools-discuss] Re: Failure with make zliao001
• [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Rene B
  • Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet David Shteynberg
  • Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Rene B
  • Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Dave Trudgian
  • Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet David Shteynberg
  • Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Dave Trudgian
  • RE: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Eric Deutsch
  • Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet David Shteynberg
  • RE: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Eric Deutsch
• [spctools-discuss] Re: Automatic generation of spectra images Jesse
• [spctools-discuss] How to calculate offset for each scan in mzXML file Jorey Dong
  • Re: [spctools-discuss] How to calculate offset for each scan in mzXML file Jimmy Eng
  • Re: [spctools-discuss] How to calculate offset for each scan in mzXML file Jorey Dong
  • Re: [spctools-discuss] How to calculate offset for each scan in mzXML file Jorey Dong
  • Re: [spctools-discuss] How to calculate offset for each scan in mzXML file Jimmy Eng
  • Re: [spctools-discuss] How to calculate offset for each scan in mzXML file Hannes Röst
• [spctools-discuss] Questions regarding PTM Prophet parameters Vidya Venkatraman
  • Re: [spctools-discuss] Questions regarding PTM Prophet parameters David Shteynberg
• [spctools-discuss] Problems with xpress peptide results Jeffrey Milloy
  • Re: [spctools-discuss] Problems with xpress peptide results Jimmy Eng
• [spctools-discuss] OMSSA help srihari sharma
  • Re: [spctools-discuss] OMSSA help Naiping Dong
  • Re: [spctools-discuss] OMSSA help 钟传奇
  • Re: [spctools-discuss] OMSSA help Robert Winkler
• [spctools-discuss] support for Morpheus search algorithm in TPP Craig Wenger
  • [spctools-discuss] Re: support for Morpheus search algorithm in TPP David
  • [spctools-discuss] Re: support for Morpheus search algorithm in TPP Dave Trudgian
  • RE: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Eric Deutsch
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Dave Trudgian
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Dave Trudgian
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
  • RE: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Trudgian
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Vidya Venkatraman
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Vidya Venkatraman
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Vidya Venkatraman
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Vidya Venkatraman
  • Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
• [spctools-discuss] combining two or more pep.xml for abacus srihari sharma

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