spctools-discuss
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[spctools-discuss] CLIPPER, where do i get it?
Konstantinos Vougas
Re: [spctools-discuss] CLIPPER, where do i get it?
Ulrich auf dem Keller
Re: [spctools-discuss] CLIPPER, where do i get it?
Konstantinos Vougas
[spctools-discuss] sorting prot.xml output by number of unique peptides
maryamafkarian
Re: [spctools-discuss] sorting prot.xml output by number of unique peptides
Luis Mendoza
Re: [spctools-discuss] sorting prot.xml output by number of unique peptides
Maryam Afkarian
[spctools-discuss] extract intensity values for peaks with defined m/z values from mzxml files
Liang QIAO
[spctools-discuss] How to extract the intensities for peaks with a specific m/z from the mzxml file
Liang QIAO
[spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file
Jason Winget
Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file
Hannes Röst
Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file
Jason Winget
Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file
Hannes Röst
Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file
Liang QIAO
Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file
Taejoon Kwon
[spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file
Liang QIAO
[spctools-discuss] Decoy issue
srihari sharma
Re: [spctools-discuss] Decoy issue
Jimmy Eng
Re: [spctools-discuss] Decoy issue
srihari sharma
Re: [spctools-discuss] Decoy issue
Jimmy Eng
Re: [spctools-discuss] Decoy issue
srihari sharma
Re: [spctools-discuss] Decoy issue
David Shteynberg
[spctools-discuss] Re: Decoy issue
srihari sharma sharma
[spctools-discuss] Next TPP course March 31 - April 4
Eric Deutsch
[spctools-discuss] ERROR: two instrument models: LTQ Orbitrap XL and LTQ Orbitrap
Adrian Guthals
[spctools-discuss] Re: ERROR: two instrument models: LTQ Orbitrap XL and LTQ Orbitrap
Adrian Guthals
Re: [spctools-discuss] ERROR: two instrument models: LTQ Orbitrap XL and LTQ Orbitrap
David Shteynberg
[spctools-discuss] Developing scoring scheme compatible with PeptideProphet
Jorey Dong
Re: [spctools-discuss] Re: Failure with make
zliao001
[spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet
Rene B
Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet
David Shteynberg
Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet
Rene B
Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet
Dave Trudgian
Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet
David Shteynberg
Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet
Dave Trudgian
RE: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet
Eric Deutsch
Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet
David Shteynberg
RE: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet
Eric Deutsch
[spctools-discuss] Re: Automatic generation of spectra images
Jesse
[spctools-discuss] How to calculate offset for each scan in mzXML file
Jorey Dong
Re: [spctools-discuss] How to calculate offset for each scan in mzXML file
Jimmy Eng
Re: [spctools-discuss] How to calculate offset for each scan in mzXML file
Jorey Dong
Re: [spctools-discuss] How to calculate offset for each scan in mzXML file
Jorey Dong
Re: [spctools-discuss] How to calculate offset for each scan in mzXML file
Jimmy Eng
Re: [spctools-discuss] How to calculate offset for each scan in mzXML file
Hannes Röst
[spctools-discuss] Questions regarding PTM Prophet parameters
Vidya Venkatraman
Re: [spctools-discuss] Questions regarding PTM Prophet parameters
David Shteynberg
[spctools-discuss] Problems with xpress peptide results
Jeffrey Milloy
Re: [spctools-discuss] Problems with xpress peptide results
Jimmy Eng
[spctools-discuss] OMSSA help
srihari sharma
Re: [spctools-discuss] OMSSA help
Naiping Dong
Re: [spctools-discuss] OMSSA help
钟传奇
Re: [spctools-discuss] OMSSA help
Robert Winkler
[spctools-discuss] support for Morpheus search algorithm in TPP
Craig Wenger
[spctools-discuss] Re: support for Morpheus search algorithm in TPP
David
[spctools-discuss] Re: support for Morpheus search algorithm in TPP
Dave Trudgian
RE: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Eric Deutsch
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Dave Trudgian
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Dave Trudgian
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
RE: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Trudgian
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Vidya Venkatraman
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Vidya Venkatraman
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Vidya Venkatraman
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Vidya Venkatraman
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
[spctools-discuss] combining two or more pep.xml for abacus
srihari sharma
Re: [spctools-discuss] combining two or more pep.xml for abacus
Jimmy Eng
[spctools-discuss] A complicated but seems easy problem of inferring FDR in protein level
zion
Re: [spctools-discuss] A complicated but seems easy problem of inferring FDR in protein level
Michael Hoopmann
[spctools-discuss] Re: A complicated but seems easy problem of inferring FDR in protein level
Brendan MacLean
[spctools-discuss] Re: A complicated but seems easy problem of inferring FDR in protein level
zion
Re: [spctools-discuss] Re: A complicated but seems easy problem of inferring FDR in protein level
Michael Hoopmann
[spctools-discuss] Next TPP course March 31 - April 4: registration is open!
Eric Deutsch
[spctools-discuss] proteome discoverer and peptide prophet comparison
Delphine
Re: [spctools-discuss] Digest for spctools-discuss@googlegroups.com - 14 Messages in 4 Topics
delphine wood
[spctools-discuss] empty interact.pep.xml and interact.prot.xml
user1
Re: [spctools-discuss] empty interact.pep.xml and interact.prot.xml
Luis Mendoza
[spctools-discuss] Re: xargs:cannot fork?
user1
Re: [spctools-discuss] Re: xargs:cannot fork?
Joseph Slagel
[spctools-discuss] Re: xargs:cannot fork?
user1
[spctools-discuss] sequest and tpp
newuser
[spctools-discuss] TPP on cluster - Petunia running remotely?
Joshua Dunham
Re: [spctools-discuss] TPP on cluster - Petunia running remotely?
Joseph Slagel
Re: [spctools-discuss] TPP on cluster - Petunia running remotely?
Gary Smith
Re: [spctools-discuss] TPP on cluster - Petunia running remotely?
Joseph Slagel
Re: [spctools-discuss] TPP on cluster - Petunia running remotely?
Joshua Dunham
[spctools-discuss] error with installing TPP4.5.2
fangqiaojun
[spctools-discuss] Re: error with installing TPP4.5.2
chr12is
Re: [spctools-discuss] Re: error with installing TPP4.5.2
Joseph Slagel
[spctools-discuss] Re: error with installing TPP4.5.2
fangqiaojun
[spctools-discuss] Re: error with installing TPP4.5.2
fangqiaojun
[spctools-discuss] Re: error with installing TPP4.5.2
fangqiaojun
[spctools-discuss] One simple problem of proteinProphet
zion
Re: [spctools-discuss] One simple problem of proteinProphet
Luis Mendoza
Re: [spctools-discuss] problem to view PepC results
Luis Mendoza
[spctools-discuss] [Please HELP!!!]Problem about phospho-peptide confidence when running peptideProphet and proteinProphet
zion
[spctools-discuss] Re: [Please HELP!!!]Problem about phospho-peptide confidence when running peptideProphet and proteinProphet
GATTACA
[spctools-discuss] apex
ato
[spctools-discuss] Re: apex
Taejoon Kwon
[spctools-discuss] Uniprot Database
ato
[spctools-discuss] Re: Uniprot Database
Jason Winget
[spctools-discuss] Problem installing TPP 4.6.3 on mac 10.7.4
Holy Rapan
[spctools-discuss] Re: Problem installing TPP 4.6.3 on mac 10.7.4
Bjorn
[spctools-discuss] PTMProphet problem!!!
zion
Re: [spctools-discuss] PTMProphet problem!!!
David Shteynberg
[spctools-discuss] Installing TPP-4.6.3 on mac os 10.7.4
Holy Rapan
[spctools-discuss] Anyone running TPP on Mac 10.9 (Mavericks)?
Bjorn
Re: [spctools-discuss] Anyone running TPP on Mac 10.9 (Mavericks)?
Joseph Slagel
Re: [spctools-discuss] Anyone running TPP on Mac 10.9 (Mavericks)?
Dave Trudgian
Re: [spctools-discuss] Anyone running TPP on Mac 10.9 (Mavericks)?
Dave Trudgian
Re: [spctools-discuss] Anyone running TPP on Mac 10.9 (Mavericks)?
Joseph Slagel
Re: [spctools-discuss] Anyone running TPP on Mac 10.9 (Mavericks)?
Dave Trudgian
Re: [spctools-discuss] Anyone running TPP on Mac 10.9 (Mavericks)?
Ulrich auf dem Keller
Re: [spctools-discuss] Anyone running TPP on Mac 10.9 (Mavericks)?
Bjorn
[spctools-discuss] TPP-4.7 Mac OS X - PepXMLViewer - memory leakage
Ulrich auf dem Keller
Re: [spctools-discuss] TPP-4.7 Mac OS X - PepXMLViewer - memory leakage
Luis Mendoza
Re: [spctools-discuss] TPP-4.7 Mac OS X - PepXMLViewer - memory leakage
Ulrich auf dem Keller
Re: [spctools-discuss] TPP-4.7 Mac OS X - PepXMLViewer - memory leakage
Ulrich auf dem Keller
[spctools-discuss] Re: Anyone running TPP on Mac 10.9 (Mavericks)?
Bjorn
[spctools-discuss] Getting (global)FDR in proteinProphet?
zion
[spctools-discuss] Error "decimal separator" on conversion process
DELOLME Frederic
RE: [spctools-discuss] Error "decimal separator" on conversion process
Eric Deutsch
Re: [spctools-discuss] Error "decimal separator" on conversion process
DELOLME Frederic
RE: [spctools-discuss] Error "decimal separator" on conversion process
Eric Deutsch
[spctools-discuss] Problem of converting .dat to .pepxml
zion
Re: [spctools-discuss] Problem of converting .dat to .pepxml
David Shteynberg
Re: [spctools-discuss] Problem of converting .dat to .pepxml
David Shteynberg
Re: [spctools-discuss] Problem of converting .dat to .pepxml
zion
Re: [spctools-discuss] Problem of converting .dat to .pepxml
David Shteynberg
Re: [spctools-discuss] Problem of converting .dat to .pepxml
zion
Re: [spctools-discuss] Problem of converting .dat to .pepxml
zion
Re: [spctools-discuss] Problem of converting .dat to .pepxml
David Shteynberg
Re: [spctools-discuss] Problem of converting .dat to .pepxml
zion
Re: [spctools-discuss] Problem of converting .dat to .pepxml
echozhoujy
[spctools-discuss] How are num_unique_peptides calculated?
Bosco Ho
Re: [spctools-discuss] How are num_unique_peptides calculated?
Luis Mendoza
[spctools-discuss] Problem analyzing raw data from samples with non specific enzyme treatment
Theofilos
Re: [spctools-discuss] Problem analyzing raw data from samples with non specific enzyme treatment
Brian Hampton
[spctools-discuss] Re: Problem analyzing raw data from samples with non specific enzyme treatment
Theofilos
[spctools-discuss] Conditional execution of tpp_models.pl in xinteract
Josh Eckels
Re: [spctools-discuss] Conditional execution of tpp_models.pl in xinteract
Luis Mendoza
[spctools-discuss] Re: Problems building boost inside TPP
Han Jo
[spctools-discuss] Re: Problems building boost inside TPP
ChargedPeptide
[spctools-discuss] Re: Problems building boost inside TPP
ChargedPeptide
[spctools-discuss] Re: Problems building boost inside TPP
Han Jo
[spctools-discuss] Re: Problems building boost inside TPP
Han Jo
Re: [spctools-discuss] Re: Problems building boost inside TPP
Joseph Slagel
Re: [spctools-discuss] Re: Problems building boost inside TPP
Han Jo
Re: [spctools-discuss] Re: Problems building boost inside TPP
Joseph Slagel
Re: [spctools-discuss] Re: Problems building boost inside TPP
Joseph Slagel
Re: [spctools-discuss] Re: Problems building boost inside TPP
Amin Momin
Re: [spctools-discuss] Re: Problems building boost inside TPP
Joseph Slagel
Re: [spctools-discuss] Re: Problems building boost inside TPP
Amin Momin
Re: [spctools-discuss] Re: Problems building boost inside TPP
Joseph Slagel
Re: [spctools-discuss] Re: Problems building boost inside TPP
Amin Momin
Re: [spctools-discuss] Re: Problems building boost inside TPP
dannjaron
[spctools-discuss] ASAPRatio error
jgibbons1
Re: [spctools-discuss] ASAPRatio error
David Shteynberg
[spctools-discuss] Re: PeptideProphet errors in tpp_models.pl
jgibbons1
[spctools-discuss] Z-score vs tandem parameters
Robert Jones
[spctools-discuss] Unable to convert OMSSA xml file to .pep.xml by omssa2pepXML.exe
punit kadimi
Re: [spctools-discuss] Unable to convert OMSSA xml file to .pep.xml by omssa2pepXML.exe
Punit Kadimi
[spctools-discuss] Unable to process comet.2012013.win64.exe output with peptide prophet
punit kadimi
[spctools-discuss] Unable to process comet.2012013.win64.exe output with peptide prophet
Punit Kadimi
Re: [spctools-discuss] Unable to process comet.2012013.win64.exe output with peptide prophet
Jimmy Eng
Re: [spctools-discuss] Unable to process comet.2012013.win64.exe output with peptide prophet
Punit Kadimi
Re: [spctools-discuss] Unable to process comet.2012013.win64.exe output with peptide prophet
Jimmy Eng
Re: [spctools-discuss] Unable to process comet.2012013.win64.exe output with peptide prophet
Punit Kadimi
[spctools-discuss] cannot convert Thermo raw data to MzML
Konstantinos Vougas
Re: [spctools-discuss] cannot convert Thermo raw data to MzML
Brian Pratt
[spctools-discuss] Re: t2D converter
Bell
[spctools-discuss] Re: t2D converter
Mehran Umerani
[spctools-discuss] Re: Mascot2XML and Lorikeet spectrum viewer
Manu
[spctools-discuss] MudPIT Protein Identification with X!Tandem
bguyonnet63 .
[spctools-discuss] label free quantitation by xpress
dwang7
Re: [spctools-discuss] label free quantitation by xpress
Jimmy Eng
Re: [spctools-discuss] label free quantitation by xpress
dwang7
[spctools-discuss] Trans-Proteomic Pipeline and PVS-Studio
Андрей Карпов
[spctools-discuss] Unexpected extension in an input file with TPP v4.6 OCCUPY RC7 rev 3
DELOLME Frederic
Re: [spctools-discuss] Unexpected extension in an input file with TPP v4.6 OCCUPY RC7 rev 3
Luis Mendoza
[spctools-discuss] Re: Unexpected extension in an input file with TPP v4.6 OCCUPY RC7 rev 3
Cedric Leduc
[spctools-discuss] Comet + InteractParser - interact.pep.xml sometimes not ended correctly
Dave Trudgian
Re: [spctools-discuss] Comet + InteractParser - interact.pep.xml sometimes not ended correctly
Luis Mendoza
[spctools-discuss] TPP 4-6-3 (and 4-6-2) don't compile in Ubuntu 13.04 (Workaround)
Samuel Wein
[spctools-discuss] Running the TPP on an HPC through Command Line
Robert Jones
Re: [spctools-discuss] Running the TPP on an HPC through Command Line
Joseph Slagel
Re: [spctools-discuss] Running the TPP on an HPC through Command Line
Robert Jones
Re: [spctools-discuss] Running the TPP on an HPC through Command Line
Joseph Slagel
Re: [spctools-discuss] Running the TPP on an HPC through Command Line
Robert Jones
Re: [spctools-discuss] Running the TPP on an HPC through Command Line
Dave Trudgian
Re: [spctools-discuss] Running the TPP on an HPC through Command Line
Robert Jones
Re: [spctools-discuss] Running the TPP on an HPC through Command Line
devesh chourasiya
Re: [spctools-discuss] Running the TPP on an HPC through Command Line
Joseph Slagel
[spctools-discuss] TPP: UNC paths are not supported when using Mascot2XML
baotranuio
Re: [spctools-discuss] TPP: UNC paths are not supported when using Mascot2XML
Joseph Slagel
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