It is giving the following error in the log files...

 PeptideProphet  (TPP v4.3 JETSTREAM rev 1, Build 200909091257
(MinGW)) akel...@isb
 read in 0 1+, 5907 2+, 4978 3+, 933 4+, 132 5+, 21 6+, and 6 7+
spectra.
Initialising statistical models ...
Iterations: .........10.........20....Estimating Retention Time
Model ... please wait ...
Assertion failed: probs->size() == run_RT_count_, file Parsers/
Algorithm2XML/RTCalculator.cxx, line 279

This application has requested the Runtime to terminate it in an
unusual way.
Please contact the application's support team for more information.

command "C:/Inetpub/tpp-bin/PeptideProphetParser
"F006140.interact.pep.xml" MINPROB=0.05 PI RT" failed: Unknown error

command "C:/Inetpub/tpp-bin/PeptideProphetParser
"F006140.interact.pep.xml" MINPROB=0.05 PI RT" exited with non-zero
exit code: 255
QUIT - the job is incomplete

command "c:\Inetpub\tpp-bin\xinteract -NF006140.interact.pep.xml -
p0.05 -l7 -OIRp c:/Inetpub/wwwroot/ISB/data/140/F006140.pep.xml"
failed: Unknown error

Command FAILED

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