Currently the mass units for the peptide mass tolerance used in a SEQUEST search is not stored in the pepXML. Since the peptide mass tolerance is stored, it would be useful if the units of that mass were also stored in the pepXML. An example from the relevant section of the sequest params file is below.
peptide_mass_tolerance = 50.00000 peptide_mass_units = 2 ; 0=amu, 1=mmu, 2=ppm I hope a small fix can be added in to read in that second line and to output to the pepXML. Thanks! -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
