spctools-discuss
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[spctools-discuss] A question about Mayu.
钟传奇
Re: [spctools-discuss] A question about Mayu.
David Shteynberg
Re: [spctools-discuss] A question about Mayu.
钟传奇
Re: [spctools-discuss] A question about Mayu.
David Shteynberg
[spctools-discuss] TTP Libra for iTRAQ quantification
Bo
Re: [spctools-discuss] TTP Libra for iTRAQ quantification
Luis Mendoza
Re: [spctools-discuss] TTP Libra for iTRAQ quantification
Bo
Re: [spctools-discuss] TTP Libra for iTRAQ quantification
SS
Re: [spctools-discuss] TTP Libra for iTRAQ quantification
Luis Mendoza
Re: [spctools-discuss] TTP Libra for iTRAQ quantification
SS
[spctools-discuss] TPP 4.7.1 Release is now available
Joseph Slagel
[spctools-discuss] qualscore
Philipp Lange
[spctools-discuss] TPP 4.7.0 installation problems on Ubuntu 14.04
Will Fondrie
Re: [spctools-discuss] TPP 4.7.0 installation problems on Ubuntu 14.04
Joseph Slagel
Re: [spctools-discuss] TPP 4.7.0 installation problems on Ubuntu 14.04
Will Fondrie
Re: [spctools-discuss] TPP 4.7.0 installation problems on Ubuntu 14.04
Will Fondrie
[spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04
ChargedPeptide
[spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04
Robert
Re: [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04
Joseph Slagel
Re: [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04
Robert Winkler
Re: [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04
Joseph Slagel
Re: [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04
Brian Hampton
[spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04
MD
Re: [spctools-discuss] idconverter (prot/pepxml to mzid): Problems with TPP
George Rosenberger
Re: [spctools-discuss] idconverter (prot/pepxml to mzid): Problems with TPP
wlstraube
[spctools-discuss] Constructing a synthetic 13C or 15N SpetraST library.
Vadim Patsalo
[spctools-discuss] Definition of the N-glyco model
Ruby
Re: [spctools-discuss] Definition of the N-glyco model
David Shteynberg
[spctools-discuss] Tandem2XML warning message - WARNING: Multiple variable modifications on Q for scan 6605.
wlstraube
[spctools-discuss] TPP translation code
Rachel
Re: [spctools-discuss] TPP translation code
Hannes Röst
Re: [spctools-discuss] TPP translation code
Jimmy Eng
[spctools-discuss] Extract UV data
Eva B
[spctools-discuss] ROC figure problem
Bo
Re: [spctools-discuss] ROC figure problem
David Shteynberg
Re: [spctools-discuss] ROC figure problem
Bo
Re: [spctools-discuss] ROC figure problem
Bo
[spctools-discuss] Can XInteract export XML result with FDR at unique peptide level?
李桂林
[spctools-discuss] FDR calculation in TPP
Bo
Re: [spctools-discuss] FDR calculation in TPP
Hannes Röst
[spctools-discuss] Re: FDR calculation in TPP
Bjorn
Re: [spctools-discuss] Re: FDR calculation in TPP
David Shteynberg
Re: [spctools-discuss] Re: FDR calculation in TPP
Bo
[spctools-discuss] Re: FDR calculation in TPP
Bo
[spctools-discuss] label-free quantification
Rachel
Re: [spctools-discuss] label-free quantification
Punit Kadimi
Re: [spctools-discuss] label-free quantification
Hannes Röst
[spctools-discuss] X!Tandem search using Petunia in Windows
Will Fondrie
Re: [spctools-discuss] X!Tandem search using Petunia in Windows
David Shteynberg
Re: [spctools-discuss] X!Tandem search using Petunia in Windows
Will Fondrie
[spctools-discuss] Peptides identified without the fixed modification C57 - carbamidomethylation
Ruby
Re: [spctools-discuss] Peptides identified without the fixed modification C57 - carbamidomethylation
David Shteynberg
[spctools-discuss] Can fval value produced by Prophet be used to calculate FDR?
liguilin223
[spctools-discuss] Sqt2XML error
Will Fondrie
Re: [spctools-discuss] Sqt2XML error
David Shteynberg
Re: [spctools-discuss] Sqt2XML error
Will Fondrie
Re: [spctools-discuss] Sqt2XML error
David Shteynberg
Re: [spctools-discuss] Sqt2XML error
Will Fondrie
Re: [spctools-discuss] Sqt2XML error
Jimmy Eng
Re: [spctools-discuss] Sqt2XML error
David Shteynberg
Re: [spctools-discuss] Sqt2XML error
Jimmy Eng
[spctools-discuss] Re: Sqt2XML error
tonikoller
[spctools-discuss] Re: Sqt2XML error
Will Fondrie
[spctools-discuss] Re: Sqt2XML error
tonikoller
[spctools-discuss] TPP 4.7 and ASAPRatio problem
Brian Hampton
Re: [spctools-discuss] TPP 4.7 and ASAPRatio problem
David Shteynberg
[spctools-discuss] TPP funding from NIGMS
Eric Deutsch
Re: [spctools-discuss] TPP funding from NIGMS
Robert Winkler
Re: [spctools-discuss] TPP funding from NIGMS
Rebekah Dawson
[spctools-discuss] Using new version of Comet with TPP
Brian Hampton
Re: [spctools-discuss] Using new version of Comet with TPP
Joseph Slagel
Re: [spctools-discuss] Using new version of Comet with TPP
Luis Mendoza
Re: [spctools-discuss] Using new version of Comet with TPP
Brian Hampton
[spctools-discuss] Error combining multiple pepXML files with ProteinProphet command v4.7.0
GATTACA
Re: [spctools-discuss] Error combining multiple pepXML files with ProteinProphet command v4.7.0
David Shteynberg
Re: [spctools-discuss] Error combining multiple pepXML files with ProteinProphet command v4.7.0
Damian
Re: [spctools-discuss] Error combining multiple pepXML files with ProteinProphet command v4.7.0
Ruby
[spctools-discuss] Can PeptideProphet and iProphet succeed with few matched decoys?
Vadim Patsalo
Re: [spctools-discuss] Can PeptideProphet and iProphet succeed with few matched decoys?
Hannes Röst
Re: [spctools-discuss] Can PeptideProphet and iProphet succeed with few matched decoys?
Vadim Patsalo
Re: [spctools-discuss] Can PeptideProphet and iProphet succeed with few matched decoys?
Hannes Röst
RE: [spctools-discuss] Can PeptideProphet and iProphet succeed with few matched decoys?
Eric Deutsch
Re: [spctools-discuss] Can PeptideProphet and iProphet succeed with few matched decoys?
Hannes Röst
[spctools-discuss] tryspin/P
Rachel
Re: [spctools-discuss] tryspin/P
David Shteynberg
[spctools-discuss] Including (custom) modifications in Tandem2XML conversion?
Vadim Patsalo
[spctools-discuss] Job xinteract wrong! ! ! help~~~
jason cao
Re: [spctools-discuss] Job xinteract wrong! ! ! help~~~
Vishal Swaroop
Re: [spctools-discuss] Job xinteract wrong! ! ! help~~~
David Shteynberg
Re: [spctools-discuss] Job xinteract wrong! ! ! help~~~
Vishal Swaroop
[spctools-discuss] protein and peptide FDR
Luciana B
Re: [spctools-discuss] protein and peptide FDR
Hannes Röst
[spctools-discuss] Is there a sequest equivalent or port that runs from linux and/or written in Java?
David Zhao
Re: [spctools-discuss] Is there a sequest equivalent or port that runs from linux and/or written in Java?
Joseph Slagel
Re: [spctools-discuss] Is there a sequest equivalent or port that runs from linux and/or written in Java?
David Zhao
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
janetmckennedy
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
Joseph Slagel
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
janetmckennedy
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
Vishal Swaroop
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
janetmckennedy
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
Vishal Swaroop
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
Joseph Slagel
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
janetmckennedy
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
janetmckennedy
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
janetmckennedy
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
Vishal Swaroop
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
janetmckennedy
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
janetmckennedy
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
Vishal Swaroop
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
Vishal Swaroop
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
janetmckennedy
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
janetmckennedy
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
Vishal Swaroop
Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server.
Stanislav Luban
[spctools-discuss] Can XInteract support MSGF+?
liguilin223
Re: [spctools-discuss] Can XInteract support MSGF+?
Jimmy Eng
Re: [spctools-discuss] Can XInteract support MSGF+?
David Shteynberg
Re: [spctools-discuss] Can XInteract support MSGF+?
liguilin223
Re: [spctools-discuss] Can XInteract support MSGF+?
David Shteynberg
[spctools-discuss] Re: Can XInteract support MSGF+?
liguilin223
[spctools-discuss] How about extracting confident PSMs according to the charge states of precursors from decoy database search results?
Jorey Dong
[spctools-discuss] Xinteract - Do not merge input checkbox leads to deletion of pep.xml output
shakembt
[spctools-discuss] ASAP ratio parameters
Ana
[spctools-discuss] date instead of file name in after dat 2 pepxml
Delphine
Re: [spctools-discuss] date instead of file name in after dat 2 pepxml
Luis Mendoza
[spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup
Robert
Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup
Luis Mendoza
Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup
Robert
Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup
Robert Winkler
Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup
Robert
Re: [spctools-discuss] Extracting mzXML peaks
Ilan Beer
[spctools-discuss] Unable to do PeptideProphet in bulk
Kate Mostovenko
[spctools-discuss] Re: Unable to do PeptideProphet in bulk
magnus.palmb...@gmail.com
[spctools-discuss] Re: Unable to do PeptideProphet in bulk
Kate Mostovenko
Re: [spctools-discuss] Re: Unable to do PeptideProphet in bulk
Luis Mendoza
Re: [spctools-discuss] Re: Unable to do PeptideProphet in bulk
Kate Mostovenko
[spctools-discuss] XPRESS values
oschill...@gmail.com
Re: [spctools-discuss] XPRESS values
Jimmy Eng
[spctools-discuss] Creating a SpectraST library -- not enough decoy matches for iProphet discriminant?
Vadim Patsalo
[spctools-discuss] Command Failed_Return Code 65280
xianyinlai
Re: [spctools-discuss] Command Failed_Return Code 65280
David Shteynberg
Re: [spctools-discuss] Command Failed_Return Code 65280
Brian Hampton
Re: [spctools-discuss] Command Failed_Return Code 65280
David Shteynberg
Re: [spctools-discuss] Command Failed_Return Code 65280
Brian Hampton
Re: [spctools-discuss] Command Failed_Return Code 65280
xianyinlai
Re: [spctools-discuss] Command Failed_Return Code 65280
xianyinlai
[spctools-discuss] xinteract of tpp4.7.0 fails with myrimatch2.138
loblum
[spctools-discuss] Apache user on RHEL for TPP
Brian Hampton
Re: [spctools-discuss] Apache user on RHEL for TPP
Joseph Slagel
[spctools-discuss] Problems getting Petunia to run after install of TPP-4.7
Brian Hampton
Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7
Joseph Slagel
Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7
Brian Hampton
Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7
Brian Hampton
Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7
Brian Hampton
Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7
Joseph Slagel
Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7
Amit Yadav
Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7
Joseph Slagel
Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7
Brian Hampton
[spctools-discuss] Comet
magnus.palmb...@gmail.com
Re: [spctools-discuss] Comet
Jimmy Eng
Re: [spctools-discuss] Comet
magnus.palmb...@gmail.com
Re: [spctools-discuss] Comet
Jimmy Eng
[spctools-discuss] Conversion of GC-MS RAW file into excel file
Karthika Ranganathan
Re: [spctools-discuss] Conversion of GC-MS RAW file into excel file
inamul hasan.madar
[spctools-discuss] TPP 4.7.0 is now available
Joseph Slagel
[spctools-discuss] Re: TPP 4.7.0 is now available
loblum
Re: [spctools-discuss] Re: TPP 4.7.0 is now available
Joseph Slagel
Re: [spctools-discuss] Re: TPP 4.7.0 is now available
loblum
Re: [spctools-discuss] Re: TPP 4.7.0 is now available
Joseph Slagel
Re: [spctools-discuss] Re: TPP 4.7.0 is now available
Robert Winkler
Re: [spctools-discuss] Re: TPP 4.7.0 is now available
Joseph Slagel
Re: [spctools-discuss] Re: TPP 4.7.0 is now available
loblum
Re: [spctools-discuss] Re: TPP 4.7.0 is now available
Joseph Slagel
[spctools-discuss] TPP mixture model failing
Brian Hampton
Re: [spctools-discuss] TPP mixture model failing
David Shteynberg
Re: [spctools-discuss] TPP mixture model failing
Brian Hampton
Re: [spctools-discuss] TPP mixture model failing
David Shteynberg
Re: [spctools-discuss] TPP mixture model failing
Brian Hampton
Re: [spctools-discuss] TPP mixture model failing
Luis Mendoza
[spctools-discuss] Peptide Prophet ERROR
user1
Re: [spctools-discuss] Peptide Prophet ERROR
David Shteynberg
Re: [spctools-discuss] Peptide Prophet ERROR
user1
Re: [spctools-discuss] Peptide Prophet ERROR
user1
[spctools-discuss] Xpress problem w/ diglycyl-lysine + SILAC-lysine
Jesse
[spctools-discuss] Mascot2ML on linux boost::exception_detail::clone_impl error
GATTACA
[spctools-discuss] Validation of mzXML schema failed using XSD.EXE utility
Josip Miller
Re: [spctools-discuss] Validation of mzXML schema failed using XSD.EXE utility
Josip Miller
Re: [spctools-discuss] Validation of mzXML schema failed using XSD.EXE utility
Joseph Slagel
[spctools-discuss] Question about MRM transition lists created by SpectraST
zhaohaiyi888
[spctools-discuss] Very elementary question
Maryam Afkarian
Re: [spctools-discuss] Very elementary question
David Shteynberg
[spctools-discuss] Total Independent Spectra Definition
Robert Jones
[spctools-discuss] Re: Total Independent Spectra Definition
Robert Jones
[spctools-discuss] combine FASTA files
zeyu sun
Re: [spctools-discuss] combine FASTA files
Joseph Slagel
Re: [spctools-discuss] combine FASTA files
Michael Hoopmann
[spctools-discuss] Re: combine FASTA files
zeyu sun
[spctools-discuss] TPP FDR Tutorial (How to use the decoy features)
Robert Jones
[spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features)
Bjorn
[spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features)
Bjorn
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