the folder was created by TPP, I can see those files by Browse Files, but
not by pepXML converter. I did specify the folder that contains to .out
files, but the pepXML converter cannot find any files within the folder.

sunsun

On Tue, Aug 31, 2010 at 10:08 AM, eric <[email protected]> wrote:

> Dear sunsun,
>
> For converting Sequest search result to pepXML, I believe you need to
> specify the folder that contains the .out files, rather than the .out files
> themselves.
>
> Cheers
> Eric
>
>
>
> On Sep 1, 2010, at 12:04 AM, Alain Doucet wrote:
>
>  Have you created the folder containing your files with the TPP? If not,
>> this is likely the reason why you don't see the files.
>>
>> good luck
>>
>> Alain
>> On 2010-08-31, at 8:56 AM, sunsun wrote:
>>
>>  I put some Sequest output files (.out and .dta files) in my folder C:
>>> \Inetpub\wwwroot\ISB\data\MOUSEMOACETD, however neither the pepXML
>>> converter and mzXML converter can find any files there.
>>> I believe there must be a small mistake somewhere, but I just cannot
>>> identify it.
>>> Any cues?
>>> thank you!
>>>
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>>>
>> Alain Doucet Ph.D.
>> Post doctoral researcher
>> Centre for Blood Research
>> Christopher Overall Laboratory
>> Room 4.420, Life Sciences Centre
>> 2350 Health Sciences Mall
>> University of British Columbia
>> Vancouver, British Columbia, Canada
>> V6T 1Z3
>>
>> Web: http://www.clip.ubc.ca
>> Tel: 604-822-3561
>> Fax: 604-822-7742
>>
>>
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