Great, thanks Matt. FYI I could get iprophet to work with search results from non-identical databases by running refreshparser on the interact.pep.xml file from the myrimatch results to update the database mappings. Although having a single database is probably cleaner so thanks again for the response.
Ben On Fri, Mar 11, 2011 at 1:15 PM, Ben Collins <[email protected]> wrote: > Hi, > > I'm trying to use myrimatch as one of a number of search engines to > combine later with iprophet. It seems that later versions of myrimatch > are doing on the fly decoy database generation, because I tried to > search a database that already had decoys appended and ended up > doubling up on the decoys. So my questions are: > > 1. Is it possible to switch of the on-the-fly decoy database > generation in myrimatch so I can use a single database with decoys > already appended for all search engines? > > 2. If its not possible to change the myrimatch decoy behaviour, will > iprophet tolerate results from different search engines using non- > identical databases? > > Many thanks for any advice, > Ben > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
