Hi,

XPRESS has the option to fix light to 1 and vary heavy or the other way
around. The PeptideProphet results reflect this correctly, however the
ProteinProphet results seem to always fix heavy to 1 regardless of the
xpress option selected. Is there an option to have ProteinProphet use the
same rule as XPRESS?

Thank you very much!
-- 
Dennis Goldfarb
Graduate Student
Department of Computer Science
University of North Carolina at Chapel Hill

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